Locus 7082

Sequence ID X_DroMel_CAF1
Location 17,760,398 – 17,760,497
Length 99
Max. P 0.548379
window11564

overview

Window 4

Location 17,760,398 – 17,760,497
Length 99
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 90.31
Mean single sequence MFE -23.06
Consensus MFE -18.66
Energy contribution -20.26
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.548379
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17760398 99 - 22224390
UAUAUAUUAGCGGAUUUUUGAAUUUGUGUA--------UUAAUGGAUUAUUGGAUGAUUGGAUUCGCGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
.........(((((((....)))))))...--------..(((((((((......((((((((((..((((....))))))))))))))......)))))))))... ( -23.00)
>DroSec_CAF1 19223 99 - 1
UAUAUAUUAGCGGAUUUUUGAAUUUGUGGA--------UUAAUGGAUUAUUGGAUGAUUGGAUUCACGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
.........(((((((....)))))))...--------..(((((((((......((((((((((..((((....))))))))))))))......)))))))))... ( -23.00)
>DroSim_CAF1 17932 99 - 1
UAUAUAUUAGCGGAUUUUUGAAUUUGUGGA--------UUAAUGGAUUAUUGGAUGAUUGGAUUCACGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
.........(((((((....)))))))...--------..(((((((((......((((((((((..((((....))))))))))))))......)))))))))... ( -23.00)
>DroEre_CAF1 17933 91 - 1
UAUAUAUUAGCGGAUUUUAGAAUUUGUG----------------GAUUAAUGAAUUAUUGGAUUCACGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
........(((((((..(((((((..((----------------((((..((((((....))))))(((((....)))))))))))....))))))))))))))... ( -21.20)
>DroYak_CAF1 17994 107 - 1
UAUAUAUUAGCGUAUUUUUGAAUUUGUGAAUUUGUGAUUUAAUGGAUUAUUGGAUUAUAGGAUUCACGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
.....(((((..(....(((((((((((((((((((((((((((...)))))))))))).)))))))((((....))))))))))))....)..)))))........ ( -25.10)
>consensus
UAUAUAUUAGCGGAUUUUUGAAUUUGUGGA________UUAAUGGAUUAUUGGAUGAUUGGAUUCACGGACCUGCGUCCGAGUUCAGUUUGGUUUUAGUUCGUUCGA
.........(((((((....))))))).............(((((((((......((((((((((..((((....))))))))))))))......)))))))))... (-18.66 = -20.26 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:41 2006