Locus 7079

Sequence ID X_DroMel_CAF1
Location 17,745,705 – 17,745,811
Length 106
Max. P 0.992949
window11560

overview

Window 0

Location 17,745,705 – 17,745,811
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -27.04
Consensus MFE -25.68
Energy contribution -25.12
Covariance contribution -0.56
Combinations/Pair 1.08
Mean z-score -1.67
Structure conservation index 0.95
SVM decision value 2.36
SVM RNA-class probability 0.992949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17745705 106 + 22224390
GUGCAUUAAUUACCUGGCUCAGGGGCCUGGCCCUUACCUUACACACCUUAUUUUAGCUCUUU--U-UUUUAAAGUGCGGUCUGUGGUGCACAAAGGAAAAUAUUCAUUA
((((((((...(((.(((.(((....)))))).......................((.((((--.-....)))).)))))...)))))))).................. ( -27.70)
>DroSec_CAF1 3219 106 + 1
GUGCAUUAAUUACCUGGCUCAUGGGCCCGGCCCUUACUCUACACACCUUAUUUGAGCUAUUU--U-UUUUUAAGUGCGGUCUGUGGUGCACAAAGGAAAAUAUUCACUA
(((((.......((.((((....)))).))........(((((.(((.((((((((......--.-..)))))))).))).))))))))))..(((((....))).)). ( -27.40)
>DroSim_CAF1 3219 108 + 1
GUGCAUUAAUUACCUGGCUCAUGGGCCCGGCCCUUACUCUACACACCUUAUUUGAGCUUUUUUUU-UUUUUAAGUGCGGUCUGUGGUGCACAAAGGAAAAUAUUCACUA
(((((.......((.((((....)))).))........(((((.(((.((((((((.........-..)))))))).))).))))))))))..(((((....))).)). ( -27.20)
>DroEre_CAF1 3338 106 + 1
GUGCAUUAAUUACCUGGCUCAUGGGCCCGGCCCUUACUUUACACACCUUAUUUGAUAUCUUU--U-UUUUUAAGUGCGGUCUGUGGUGCACAGAGGAUAAUAUUCACUA
((((((......((.((((....)))).)).........((((.(((.(((((((.......--.-...))))))).))).))))))))))..((((......)).)). ( -26.50)
>DroYak_CAF1 3258 107 + 1
GUGCAUUAAUUACCUGGCUCAUGGGCCCGGCCCUUACUUUACACACCUUAUUUGAUCUCUUU--UUUUUUUAAGUGCGGUCUGUGGUGCACGGAGGAAAAUAUUCACUA
((((((......((.((((....)))).)).........((((.(((.(((((((.......--.....))))))).))).))))))))))(((........))).... ( -26.40)
>consensus
GUGCAUUAAUUACCUGGCUCAUGGGCCCGGCCCUUACUUUACACACCUUAUUUGAGCUCUUU__U_UUUUUAAGUGCGGUCUGUGGUGCACAAAGGAAAAUAUUCACUA
(((((.......((.((((....)))).))........(((((.(((.(((((((..............))))))).))).)))))))))).................. (-25.68 = -25.12 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:37 2006