| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,741,875 – 17,741,981 |
| Length | 106 |
| Max. P | 0.905295 |
| Location | 17,741,875 – 17,741,981 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 92.58 |
| Mean single sequence MFE | -33.82 |
| Consensus MFE | -29.12 |
| Energy contribution | -28.92 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17741875 106 - 22224390 CAAUUGAUCCU-UGGCGGAGUAGUAACUCCCAUCUUGCUACUCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCCCGAAU ...(((((..(-(.((((((((((((........))))))))).((((((....).)))))....))).))....)))))..(((.((((((.....))))))))). ( -37.70) >DroSec_CAF1 1798 106 - 1 CAAUGGAUCCU-UGUCGGAGUGGUAACUCCCAUCUUGCUGUUCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCCCGAAU ....(((....-..(((((((....)))))........(((((.(((..((.((....)).))..)))))))).....))...)))((((((.....)))))).... ( -33.20) >DroSim_CAF1 1784 106 - 1 CAAUGGAUCCU-UGGCGGAGUGGUAACUCCCAUCUUGCUGUUCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCCCGAAU ....(((...(-(((((..((((......))))..)))(((((.(((..((.((....)).))..))))))))....)))...)))((((((.....)))))).... ( -34.30) >DroEre_CAF1 1799 107 - 1 CAAUUAACCCUUUGGAGGAGUGGUAACUCCUAUCUUGCUGCCCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCUCGAAU ..........(((((((((((....))))))...(((((((...((((((....).))))).....)).)))))..))))).(((.((((((.....))))))))). ( -32.50) >DroYak_CAF1 2044 106 - 1 CAAUUAACCCA-UGAAGGAGUGGUAACUCCCAUCUUGAUGGCCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCUCGAGU ...........-.((((((((....)))))....(((((.((..(((..((.((....)).))..)))..))...)))))..)))(((((((.....)))))))... ( -31.40) >consensus CAAUUGAUCCU_UGGCGGAGUGGUAACUCCCAUCUUGCUGCUCAGUGUCCUUCGGUGACGCAGUUCGCGAGCAAAAUCGAAUUUCUGGGCAUGACUAAUGCCCGAAU ................(((((....)))))....(((((.....(((..((.((....)).))..))).)))))........(((.((((((.....))))))))). (-29.12 = -28.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:36 2006