Locus 7073

Sequence ID X_DroMel_CAF1
Location 17,725,848 – 17,725,968
Length 120
Max. P 0.895225
window11551

overview

Window 1

Location 17,725,848 – 17,725,968
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -18.10
Consensus MFE -15.97
Energy contribution -15.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.895225
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17725848 120 + 22224390
CCAGCAAGUAAAACCAUACAAAGGUGCUGUUCACGCGCACAGUGCAUCCAUCAGUGCAACUCCGCACCACGCCAUCAUCAGCAACACACCCCCUAAAAAAAAAAACCCAGUAUUCCUUCC
...((..(((......)))...((((.((((...(((.....(((((......)))))....))).....((........))))))))))...................))......... ( -18.00)
>DroSec_CAF1 30217 114 + 1
CCAGCAAGUAAAACCAUACAAAGGUGCUGUUCACGCGCACAUUGCAUCCAUCAGUGCAACUCCGCACCACGCUAUCAUCAGCAACACUUCCCCUAA------AAACCCAGUAUUCCUCCC
...............((((...((((((((......)))..((((((......))))))....)))))..(((......)))..............------.......))))....... ( -18.40)
>DroEre_CAF1 30349 108 + 1
CCAGCAAGUAAAACCAUACAAAGGUGCCGUUCAUGCGCACAGUGCA----UCAGUGCAACAUCGCACCACACCAUCAUCAGCAACACUCCC--AAA------AAACCCAGUAUUCCUCCC
...((..(((......)))...((((......((((((...)))))----)..((((......))))..)))).......)).........--...------.................. ( -18.20)
>DroYak_CAF1 31718 109 + 1
CCAGCAAGUAAAACCAUACAAAGGUGCUGUUCACGCGCACAGUGCA----UCAGUGCAACUCCGCACCACACCAUCAUCAGCAACACUCCCC-CAA------ACACCCAGUACUCCUCCC
...((..(((......)))...(((((.((((((((((...)))).----...))).)))...)))))............))..........-...------.................. ( -17.80)
>consensus
CCAGCAAGUAAAACCAUACAAAGGUGCUGUUCACGCGCACAGUGCA____UCAGUGCAACUCCGCACCACACCAUCAUCAGCAACACUCCCC_UAA______AAACCCAGUAUUCCUCCC
...((..(((......)))...(((((.((....))((((.............))))......)))))............))...................................... (-15.97 = -15.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:29 2006