Locus 7072

Sequence ID X_DroMel_CAF1
Location 17,725,717 – 17,725,808
Length 91
Max. P 0.678116
window11550

overview

Window 0

Location 17,725,717 – 17,725,808
Length 91
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 85.92
Mean single sequence MFE -41.08
Consensus MFE -32.36
Energy contribution -32.55
Covariance contribution 0.19
Combinations/Pair 1.11
Mean z-score -1.61
Structure conservation index 0.79
SVM decision value 0.30
SVM RNA-class probability 0.678116
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17725717 91 + 22224390
-----------------AGCACAGGGAGGUCCAGCUAAGCCGGGUCACCAAAGAGCCGGAACGGAGGGCGACCGGCGCCCAGUCCGCUUACUGCUGCUGGAAGCAAGU
-----------------........(...((((((..((((((.((......)).))))..(((((((((.....)))))..))))....))...))))))..).... ( -35.00)
>DroSec_CAF1 30074 103 + 1
-----AGGAGCAGAAGGAGAACAGGGAGGUCCAGCUGAGCCGGGCCACCAAAGAGCCGGAACGGAGGGCGACCGGCGCCCAGUCCGCUUACUGCUGCUGGAAGCAAGU
-----((.(((((...........((.(((((.((...)).))))).))...((((.(((.(...(((((.....))))).)))))))).))))).)).......... ( -39.00)
>DroEre_CAF1 30203 106 + 1
--AUCAGGAGCAGAAGGAGCACAGGGAGGUCCAGCUGAGCCGGGCCACCAAAGAGCGGGAACGGAGGGCGACCAGCGCUCAAUCCGCUUACUGCUGCUGGAAGCAAGU
--.((((.(((((...........((.(((((.((...)).))))).))...(((((((....(((.((.....)).)))..))))))).))))).))))........ ( -44.60)
>DroYak_CAF1 31570 108 + 1
GGAGCAGGAGCAGAAGCAGCACAGGGAGGUCCAGCUGGGCCGGGCCACCAAAGAGCGGGAACGGAGGGCGAACGGCGUCCAUUCCGCUUACUGCUGCUGGAAGCAAGU
....(((.(((((((((.((.(..((.(((((.((...)).))))).))...).)).((((.(((.(.(....).).))).)))))))).))))).)))......... ( -45.70)
>consensus
_____AGGAGCAGAAGGAGCACAGGGAGGUCCAGCUGAGCCGGGCCACCAAAGAGCCGGAACGGAGGGCGACCGGCGCCCAGUCCGCUUACUGCUGCUGGAAGCAAGU
..................((.(((((.(((((.((...)).))))).))....(((((...(((((((((.....)))))..))))....))))).)))...)).... (-32.36 = -32.55 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:28 2006