Locus 7071

Sequence ID X_DroMel_CAF1
Location 17,724,887 – 17,724,994
Length 107
Max. P 0.919612
window11549

overview

Window 9

Location 17,724,887 – 17,724,994
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.95
Mean single sequence MFE -23.98
Consensus MFE -21.34
Energy contribution -21.09
Covariance contribution -0.25
Combinations/Pair 1.08
Mean z-score -1.90
Structure conservation index 0.89
SVM decision value 1.13
SVM RNA-class probability 0.919612
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17724887 107 + 22224390
CCUCACAGCUCCUUAUCGUUGGCUUGUAAAUCGACGUAGGACAGCCCAUCCCUGACCCCCAUAACGCUAGAACUUUG-------------CCAUUGCUCCUCCUACUUUGAUUUACAUGC
.....((((........))))((.((((((((((.(((((((((.......)))...........((.........)-------------).........)))))).)))))))))).)) ( -25.10)
>DroSec_CAF1 29274 107 + 1
ACUCACAGCUCCUUAUCGUUGGCUUGUAAAUCGACGUAGGACAGCCCAUCCCUGACCCCCAUAACGCUAGAACUUUG-------------CCAUUGCUCCUCCUACUUUGAUUUACAUGC
.....((((........))))((.((((((((((.(((((((((.......)))...........((.........)-------------).........)))))).)))))))))).)) ( -25.10)
>DroEre_CAF1 29381 120 + 1
ACUCGCAGCUCCUUAUCGUUGGCUUGUAAAUCGACGUAGAACAGCCCAUCCCUGACCCCCAUAUCGCUAGCCCUUUGCCCUUUGCCAUUGCCAUUGCUCUUUCUAGUUUGAUUUACAUUC
.....((((........))))...((((((((((..((((((((.......)))...........((..((.....((.....))....))....))...)))))..))))))))))... ( -18.60)
>DroYak_CAF1 30713 119 + 1
ACUCGCAGCUCCUUAUCGUUGGCUUGUAAAUCGACGUAGGACAGGCCAUCCCUGACCCCCAUAACGCUAGCCCUUUGCC-AUUGCCAUUGCCAUUGCUCUUCCUAUUUUGAUUUACAUUC
.....((((........))))...((((((((((.((((((((((.....))))......................((.-((.((....)).)).))...)))))).))))))))))... ( -27.10)
>consensus
ACUCACAGCUCCUUAUCGUUGGCUUGUAAAUCGACGUAGGACAGCCCAUCCCUGACCCCCAUAACGCUAGAACUUUG_____________CCAUUGCUCCUCCUACUUUGAUUUACAUGC
.....((((........))))...((((((((((.(((((((((.......)))...........((............................))...)))))).))))))))))... (-21.34 = -21.09 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:27 2006