Locus 7070

Sequence ID X_DroMel_CAF1
Location 17,723,393 – 17,723,504
Length 111
Max. P 0.607677
window11548

overview

Window 8

Location 17,723,393 – 17,723,504
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -36.83
Consensus MFE -19.50
Energy contribution -20.18
Covariance contribution 0.69
Combinations/Pair 1.33
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.15
SVM RNA-class probability 0.607677
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17723393 111 - 22224390
UUU-GGCCGAAUAUUCGCAGUGUGUGCGUAGCGGGUUAGGCAAAAAAUACCAGCCGGCG-------AUAUACCGCAAUAUGCCAGAAUA-UGGCAUCAAAAAAUACCAGGGGCAUACACG
...-.((.((....)))).((((((((.(....(((..(((...........))).(((-------......)))...((((((.....-))))))........)))..).)))))))). ( -31.30)
>DroSec_CAF1 27718 110 - 1
UUU-GGCCGAGUUUCUGCAGUGUGCACACAGCGGGAUGGGCAGAAAAUACCAGCCGGCG-------AUGUGCCGCAAUAUGCCAGAUUA-UGGCAUCAAAAAAUACCAGG-AAAUACGCU
...-(((....((((((..(((.(((((..((.((.(((..........))).)).)).-------.))))))))...((((((.....-))))))..........))))-))....))) ( -37.20)
>DroEre_CAF1 27767 118 - 1
UCU-GUCUGAAUCUCUGCAGUGUGACCGCAGCGGGGUGCGGCGAAAAUACCAGCCGGUGGAAAGCCAUAUACCGCAAUAUGCCAGAUUACUGGCAGUAA-AAACACCACGGGGAUACACU
...-...((.(((((((..((((....((.((((..((.(((.....((((....))))....))).))..))))....((((((....))))))))..-..))))..))))))).)).. ( -42.60)
>DroYak_CAF1 29091 119 - 1
UUUGGUCUGAAUCUGUGCAGUGUGACCGCAGCGGGUUGGGCAGAAAAUACCAGCCGGCGAAAAGCCGUAUACCGCAAUAUGCCAGAUGGUAUGCAACAA-AAAUACCACGCGAAUACACU
..................((((((..(((.(((((((((..........)))))((((.....))))....))))..((((((....))))))......-.........)))..)))))) ( -36.20)
>consensus
UUU_GGCCGAAUCUCUGCAGUGUGACCGCAGCGGGUUGGGCAGAAAAUACCAGCCGGCG_______AUAUACCGCAAUAUGCCAGAUUA_UGGCAUCAA_AAAUACCACGGGAAUACACU
........(.((((((((.(((((......((.((((((..........)))))).)).........))))).))....(((((......)))))..............)))))).)... (-19.50 = -20.18 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:26 2006