Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,945,268 – 1,945,367 |
Length | 99 |
Max. P | 0.860812 |
Location | 1,945,268 – 1,945,367 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -41.02 |
Consensus MFE | -26.31 |
Energy contribution | -27.88 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.15 |
Structure conservation index | 0.64 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1945268 99 - 22224390 ---AUUCGGAAGCUCAUCUCUUGGCCAGCCAGCGGUGACCCCGACCCGAUACUUCGAGGCGUGCCGCACUUCGCC-----GGC--UGGCAUUGGAAUAUAAGUUUC-ACA----- ---.....((((((.((.(((..(((((((.((((((...(((.(((((....))).)))).)...)))..))).-----)))--))))...)))..)).))))))-...----- ( -37.40) >DroSec_CAF1 7777 95 - 1 ---AUUCGGAAGCUCAUCUCUUGACC----AGCGGUGACCCCGACCCGAUACUUCGGGGCGUGCCGCACUCCGCC-----GGC--UGGCAUUGGAAUAUGAGUUUC-UGA----- ---..((((((((((((((..((.((----(((((((.......(((((....)))))(((...)))....))))-----.))--)))))..)))...))))))))-)))----- ( -43.20) >DroEre_CAF1 8634 108 - 1 UCCAUUCGGAAGCUCAUCUCUUGGCC----AGCGGUGACCCCGACCCGGUAGUUCGGGGCAUGCCACACUCCGCCUGGGCGGC--UGGCAUUGGAAUAUGAAUUUC-AGAGUGCG ..(((((.((((.((((.(((..(((----((((((..((((((.(.....).))))))...)))......(((....)))))--))))...)))..)))).))))-.))))).. ( -44.10) >DroYak_CAF1 8096 108 - 1 UCCAUUCGGAAGCUCAUCUCUUGGCC----AGCGGUGACCCCGAC-CGAUAGUUCGUGGCAUGCCACACUCCGCCAGUGCGGCAGUGGCAUUGGAAUAUGAGUUUUAAGAGUG-- ..(((((.(((((((((.(((..(((----(.(((.....)))..-(((....)))))))(((((((...((((....))))..))))))).)))..)))))))))..)))))-- ( -39.40) >consensus ___AUUCGGAAGCUCAUCUCUUGGCC____AGCGGUGACCCCGACCCGAUACUUCGGGGCAUGCCACACUCCGCC_____GGC__UGGCAUUGGAAUAUGAGUUUC_AGA_____ ........(((((((((.(((..(((.....((((((.((((((.........))))))..)))))).....(((.....)))...)))...)))..)))))))))......... (-26.31 = -27.88 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006