| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,720,210 – 17,720,302 |
| Length | 92 |
| Max. P | 0.728758 |
| Location | 17,720,210 – 17,720,302 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -19.85 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.58 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17720210 92 + 22224390 ACAGCAACGCUGUUAACGCCUAACAGCACGCUGUAUAUUGCUGAACGCUUGAGUUUCGACUCUCUUUCU-----------GCUCUC-------UCUU-----UUUUCAACCUAAC (((((...(((((((.....)))))))..))))).....((.(((.(...((((....)))).).))).-----------))....-------....-----............. ( -20.60) >DroPse_CAF1 28263 113 + 1 ACAGC-ACGCUGUUAAUCGUUAACAGUGCAGUGUUGUUUUCCUGACGCCUGGC-UUUGACUUCUUUUCCACUCCGCUCUCGCUCUCUCGUUUCUCUUUCGCCUUUUCAACAUAAC (((((-(((((((((.....)))))))...))))))).....(((.....(((-...(....)...........((....)).................)))...)))....... ( -17.00) >DroSec_CAF1 24567 92 + 1 ACAGCAACGCUGUUAACGCCUAACAGCACGCUGUAUAUUGCUGGACGCUUGAGUUUCGACUCUCUUUCU-----------GCUCUC-------UCUU-----UUUUCAACCUAAC (((((...(((((((.....)))))))..))))).....((.(((.(...((((....)))).).))).-----------))....-------....-----............. ( -20.10) >DroSim_CAF1 26646 92 + 1 ACAGCAACGCUGUUAACGCCUAACAGCACGCUGUAUAUUGCUGGACGCUUGAGUUUCGACUCUCUUUCU-----------GCUCUC-------UCUU-----UUUUCAACCUAAC (((((...(((((((.....)))))))..))))).....((.(((.(...((((....)))).).))).-----------))....-------....-----............. ( -20.10) >DroEre_CAF1 25805 92 + 1 ACAGCAACGCUGUUAACGCCUAACAGCACGCUGUAUAAUGCUGGACGCUUGAGUUUUGACUCUCUUUCU-----------GCGCUC-------UCUU-----UUUUCAACCUAAC (((((...(((((((.....)))))))..)))))........(..(((..(((........))).....-----------)))..)-------....-----............. ( -21.20) >DroYak_CAF1 25790 92 + 1 ACAGCCACGCUGUUAACGCCUAACAGCACGCUGUAUAAUGCUGGACGCUUGAGUUUCGACUCUCUUUCU-----------GCUCUC-------UCUU-----UUUUCAACCUAAC (((((...(((((((.....)))))))..))))).....((.(((.(...((((....)))).).))).-----------))....-------....-----............. ( -20.10) >consensus ACAGCAACGCUGUUAACGCCUAACAGCACGCUGUAUAUUGCUGGACGCUUGAGUUUCGACUCUCUUUCU___________GCUCUC_______UCUU_____UUUUCAACCUAAC (((((...(((((((.....)))))))..)))))................((((....))))..................................................... (-14.33 = -14.58 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:23 2006