Locus 7067

Sequence ID X_DroMel_CAF1
Location 17,719,601 – 17,719,695
Length 94
Max. P 0.766679
window11543 window11544

overview

Window 3

Location 17,719,601 – 17,719,695
Length 94
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 94.16
Mean single sequence MFE -33.90
Consensus MFE -27.38
Energy contribution -29.50
Covariance contribution 2.12
Combinations/Pair 1.06
Mean z-score -2.15
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.766679
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17719601 94 + 22224390
UGUGGGCGGUUGGGUGUAAAAAGUGCAACGCAAGCAGGGUUGCCACCUUUUGCGGCUCUGUUGCGUCGU---UGUUUUUAUUGCUAUUUUGGCGUCG
....((((.(..(((((((.(((.(((((((.(((((((((((........)))))))))))..).)))---))).))).)))).)))..).)))). ( -33.10)
>DroSec_CAF1 23937 97 + 1
UGUGGGCGGUUGGGUGUAAAAAGUGCAACGCAAGCAGGGUUGCCACCUUUUGCGGCUCUGUUGCGUUGUUGUUGUUUUUAUUGCUAUUUUGGCGUCG
....((((.(..((((((((((..(((((((((.(((((((((........)))))))))))))))))).....)))))).)))).....).)))). ( -33.90)
>DroEre_CAF1 25089 97 + 1
GGUGGGCGGUUGGGUGUAAAAAGUGCAACGGCCACAGGGUUGCCACCUUUUGCGGCGCUGUUGCGUCGUUGUUGUUUUUAUUGCUAUUUUGGCGUCG
....((((.(..((((((((((..(((((((((((((.(((((........))))).))).)).))))))))..)))))).)))).....).)))). ( -33.40)
>DroYak_CAF1 25126 97 + 1
GGUGGGCGGUUGGGUGUAAAAAGUGCAACGGCAGCAGGGUUGCCACCUUUUGCGGCGCUGUUGCGUCGUUGUUGUUUUUAUUGCUAUUUUGGCGUCG
....((((.(..((((((((((..(((((((((((((.(((((........))))).)))))))..))))))..)))))).)))).....).)))). ( -35.20)
>consensus
GGUGGGCGGUUGGGUGUAAAAAGUGCAACGCAAGCAGGGUUGCCACCUUUUGCGGCGCUGUUGCGUCGUUGUUGUUUUUAUUGCUAUUUUGGCGUCG
....((((.(..((((((((((..(((((((((((((((((((........)))))))))))))..))))))..)))))).)))).....).)))). (-27.38 = -29.50 +   2.12)

alignment

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secondary structure

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dotplot

Postscript

Window 4

Location 17,719,601 – 17,719,695
Length 94
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 94.16
Mean single sequence MFE -21.15
Consensus MFE -16.06
Energy contribution -17.12
Covariance contribution 1.06
Combinations/Pair 1.06
Mean z-score -2.35
Structure conservation index 0.76
SVM decision value 0.15
SVM RNA-class probability 0.607332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17719601 94 - 22224390
CGACGCCAAAAUAGCAAUAAAAACA---ACGACGCAACAGAGCCGCAAAAGGUGGCAACCCUGCUUGCGUUGCACUUUUUACACCCAACCGCCCACA
....((.......))..((((((..---.(((((((((((.(((((.....)))))....))).))))))))...))))))................ ( -22.40)
>DroSec_CAF1 23937 97 - 1
CGACGCCAAAAUAGCAAUAAAAACAACAACAACGCAACAGAGCCGCAAAAGGUGGCAACCCUGCUUGCGUUGCACUUUUUACACCCAACCGCCCACA
....((.......))..............(((((((((((.(((((.....)))))....))).))))))))......................... ( -21.10)
>DroEre_CAF1 25089 97 - 1
CGACGCCAAAAUAGCAAUAAAAACAACAACGACGCAACAGCGCCGCAAAAGGUGGCAACCCUGUGGCCGUUGCACUUUUUACACCCAACCGCCCACC
....((.......))..((((((...(((((..((....))((((((...((.(....))))))))))))))...))))))................ ( -20.90)
>DroYak_CAF1 25126 97 - 1
CGACGCCAAAAUAGCAAUAAAAACAACAACGACGCAACAGCGCCGCAAAAGGUGGCAACCCUGCUGCCGUUGCACUUUUUACACCCAACCGCCCACC
.............(((((...........((.(((....))).)).....((..(((....)))..)))))))........................ ( -20.20)
>consensus
CGACGCCAAAAUAGCAAUAAAAACAACAACGACGCAACAGAGCCGCAAAAGGUGGCAACCCUGCUGCCGUUGCACUUUUUACACCCAACCGCCCACA
....((.......))..............(((((((((((.(((((.....)))))....))).))))))))......................... (-16.06 = -17.12 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:22 2006