| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,718,743 – 17,718,848 |
| Length | 105 |
| Max. P | 0.657572 |
| Location | 17,718,743 – 17,718,848 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 66.79 |
| Mean single sequence MFE | -44.13 |
| Consensus MFE | -17.34 |
| Energy contribution | -16.98 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17718743 105 + 22224390 AGGAGGCGGCCUGUCGCGCCGCAUCCGCCGCCGUGGAGGCCAAGCAAAAGGUCGGCACCGGCAGUUUGCUGUACAAGUCGUCGGUUCACCGCCUACCCACUGUCG----- .(((((((((((.((((((.((....)).).))))))))))........(((.((.((((((..((((.....))))..))))))))))))))).))........----- ( -42.70) >DroSec_CAF1 23094 101 + 1 GGGAGGCGGCCUGUCGCGCUGCAUCCGCCGCCGUGGAGGCCAAGCAAAAAGUCAGCUCCGCCGCUUUGCUGUGCAAGACGUCGCCUCACCGCCCACCCAAU--------- ((((((((((..(((((((.((((((((....)))))(((..(((.........)))..)))....))).))))..))))))))))).))...........--------- ( -42.10) >DroSim_CAF1 25182 101 + 1 GGGAGGCGGCCUGUCGCGCUGCAUCCGCCGCCGUGGAGGCCAAGCAAAAAGUCACCUCCGCCGCUUUGCUGUGCAAGACAACGCCUCACCGCCCACCCAAU--------- ((((((((...((((((((.(((......((.(((((((....((.....))..))))))).))..))).))))..)))).)))))).))...........--------- ( -40.50) >DroEre_CAF1 24300 93 + 1 AGGAGGCGGCCUGUCGCGCCGCAUCCGCCGCUGUGGAGGCCAAACAAAAGGUAACCUCCUGCAGUUUUCUGCCCUUGCCCCCGGCU------------ACUGCCG----- .((.((((((((.((((((.((....)).)).))))))))).......(((......)))((((....))))....))).))(((.------------...))).----- ( -37.60) >DroYak_CAF1 24272 93 + 1 GGGAGGCGGCCUGUCGUGCCGCAUCCGCCGCCGUGGAGGCCAAGCAAAAGGUCACCGCCGGCAUUUUGCUGCCCACACCCACGGCG------------GCUCCCG----- ((((.((((((....).)))))....((((((((((.(((..(((((((.(((......))).)))))))))).....))))))))------------)))))).----- ( -52.00) >DroAna_CAF1 32237 108 + 1 AGGAGGCAGCCUAUAGAGCUGCCUCUGCAGCGGUGGAGGCACGCCAGAAGGCCUCCAUGUCCACCUGCCAG--CAGCAGCAGUUUCCACCGCCCAAGCCAUGCGGCGGUC .((((((((((....).)))))))))...(((((((((((..(((....)))............((((...--..))))..)))))))))))....(((....))).... ( -49.90) >consensus AGGAGGCGGCCUGUCGCGCCGCAUCCGCCGCCGUGGAGGCCAAGCAAAAGGUCACCUCCGCCACUUUGCUGUCCAAGACCACGGCUCACCGCCCACCCAAUGCCG_____ .(((.((((((....).))))).)))(((.(....).)))...................................................................... (-17.34 = -16.98 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:19 2006