Locus 7063

Sequence ID X_DroMel_CAF1
Location 17,705,641 – 17,705,761
Length 120
Max. P 0.679399
window11537

overview

Window 7

Location 17,705,641 – 17,705,761
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.47
Mean single sequence MFE -30.41
Consensus MFE -26.50
Energy contribution -27.02
Covariance contribution 0.52
Combinations/Pair 1.08
Mean z-score -1.30
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.679399
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17705641 120 + 22224390
GUUUUUUUUUUAUUGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA
............((((((...(((((((((...((....)).......((.(((((((.........))))))))))))))))))...((((............)))).....)).)))) ( -28.70)
>DroSec_CAF1 10020 117 + 1
GUUUU-AUUU--GGGGGAAAAGUUGCGUGCAACUCAUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA
.....-...(--(((((((..(((((((((..((((((((((........................))))))))))))))))))).))).))))).........((.(......).)).. ( -31.66)
>DroSim_CAF1 11157 118 + 1
GUUUUUUUUU--GGGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA
.........(--(((((((..(((((((((...((....)).......((.(((((((.........)))))))))))))))))).))).))))).........((.(......).)).. ( -31.70)
>DroEre_CAF1 10874 114 + 1
GGUUUU------UGGGGAACAGUUGCGUGCAACUCCUGUGAACUUAAGCUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAAUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA
(((...------(((((....(((((((((.((....)).........((.(((((((.........)))))))))))))))))).....))))).((......)).........))).. ( -29.60)
>DroYak_CAF1 10855 114 + 1
GGUUUU------UGGGGAAAAGUUGCGUGCAACUCGUAUGAACUCAAAGUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAAUCGCCCCACCCACAAAAGGCGCAUAAUCACCGA
(((...------(((((....(((((((((..(((((((.........))))((((((.........)))))))))))))))))).....))))).((......)).........))).. ( -30.40)
>consensus
GUUUUU_UUU__UGGGGAAAAGUUGCGUGCAACUCGUAAGAACUCAAACUGCGUGAAAUAUUAACAUUUUUAUGAGGCAUGCGACAUUCGCCCCACCCACUCAAGGCGCAUAAUCACCGA
.............((((....(((((((((..((((((((((........................))))))))))))))))))).....))))..........((.(......).)).. (-26.50 = -27.02 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:16 2006