Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,702,530 – 17,702,626 |
Length | 96 |
Max. P | 0.575847 |
Location | 17,702,530 – 17,702,626 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.98 |
Mean single sequence MFE | -17.03 |
Consensus MFE | -4.27 |
Energy contribution | -4.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.25 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17702530 96 + 22224390 UUCG-------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGAGAGAGCUUUUGCUUCAAAG----CAGCUCCAAAAA-AAAUCAAAUUCAUAAUC ...(-------------------((.....((((............................)))).(.(((((...(((....))----))))))).....-..)))............ ( -10.19) >DroSec_CAF1 6764 92 + 1 UGC--------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG--GAGCUUUUGCUUUAAAG----CAGCUCCCAA-A-AAAUCAAAUUCAUAAUC ...--------------------.........................................(((--(((((...(((....))----))))))))).-.-................. ( -15.60) >DroSim_CAF1 7879 92 + 1 UGC--------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG--GAGCUUUUGCUUCAAAG----CAGCUCCCAA-A-AAAUCAAAUUCAUAAUU ...--------------------.........................................(((--(((((...(((....))----))))))))).-.-................. ( -15.60) >DroEre_CAF1 7593 111 + 1 UGCGUUUGCCACCAAGCGCACGCAUAAACACAGUACCCACUCGCUACGAACUACAACAC--AACUCG--GAGCUUUUGCAUCAAAG----CAGCUCGUAA-AAAAAUUAAAUUCAUAAUC ((((((((....)))))))).((...................(((.(((..........--...)))--.)))...(((......)----))))......-................... ( -17.82) >DroYak_CAF1 7701 116 + 1 UGCGUUUGCCACCAGGCGCCCGCAUAAACACAGUACCCACUCGCUACGAACUACAACACAUAACUCG--GAGCUAUUGCAUCAAAGCAAGCAGCUCGCAA-A-AAAUUAAAUUCAUAAUC ((((..((((....))))..))))..................((..(((...............)))--(((((.((((......))))..)))))))..-.-................. ( -25.96) >consensus UGCG___________________AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG__GAGCUUUUGCUUCAAAG____CAGCUCCCAA_A_AAAUCAAAUUCAUAAUC .....................................................................(((((.................)))))........................ ( -4.27 = -4.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:14 2006