Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,941,077 – 1,941,210 |
Length | 133 |
Max. P | 0.993984 |
Location | 1,941,077 – 1,941,172 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 76.61 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -21.24 |
Energy contribution | -22.55 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.74 |
Structure conservation index | 0.60 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1941077 95 + 22224390 CCGAAACUCGUUCGCAU----CCAUUUGCGGCAAAUGCCAGAAGCUGCUUCGCCUGGCCAAGCUGGUCGU--------CUGAUCGCGUUUCGCGAUCUAAGCGAUC---------U ............((((.----.....))))((....(((((..((......)))))))...)).((((((--------..(((((((...)))))))...))))))---------. ( -31.90) >DroSec_CAF1 3641 93 + 1 -CGAAACCCGUUCGCAU----CCAUUUGCGGCAAAUGCCAAAAGCUGCUCCGCCUGGCCAAGCUGCUAGU--------CUGAUCGCGUUUCGCGAUCUAAGCGAUC---------- -..........((((..----......(((((....((((...((......)).))))...)))))....--------..(((((((...)))))))...))))..---------- ( -29.00) >DroEre_CAF1 4200 112 + 1 CCGAAACUCGUUCGCAGCCAGCCAUUUGCGGCAAAUGCCAAAAGCCGCUUCGCGUGGCCAAGCUGAUCGGCUGAUCGGCUGAUC----UUGGCGAUCUUAGCGAUCUCAGCGAUCU .........(.((((.(((((((((..(((((...........))))).....)))))......((((((((....))))))))----.))))((((.....))))...)))).). ( -42.40) >DroYak_CAF1 3908 111 + 1 CCGAAACUUGUUCGCAG----CCAUUUGUGGCAAAUGCCAAAAGCUGCUUCGCUUGGCCAAG-UGCUCUGCUGCUUCGCUGAUCGCGUUUCGUGAUCUAAGCGAUCUUAGCGAUCU ..((.(((((..(((((----(......((((....))))...))))).......)..))))-)..))(((((..((((((((((((...)))))))..)))))...))))).... ( -37.31) >consensus CCGAAACUCGUUCGCAG____CCAUUUGCGGCAAAUGCCAAAAGCUGCUUCGCCUGGCCAAGCUGCUCGG________CUGAUCGCGUUUCGCGAUCUAAGCGAUC_________U ...........((((............(((((....(((((..((......)))))))...)))))..............((((((.....))))))...))))............ (-21.24 = -22.55 + 1.31)
Location | 1,941,113 – 1,941,210 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -20.94 |
Energy contribution | -22.38 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.51 |
Structure conservation index | 0.55 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1941113 97 + 22224390 GAAGCUGCUUCGCCUGGCCAAGCUGGUCGU--------CUGAUCGCGUUUCGCGAUCUAAGCGAUC---------UUAGCGUUCUGCAGUCAGAUCGAUUAAAUCACUCGGCUA ..((((((((.((...)).))))(((((((--------(((((.(((...(((((((.....))))---------...)))...))).)))))).))))))........)))). ( -31.10) >DroSec_CAF1 3676 96 + 1 AAAGCUGCUCCGCCUGGCCAAGCUGCUAGU--------CUGAUCGCGUUUCGCGAUCUAAGCGAUC----------UAGCGAUCUGCAGUAAGAUCGAUUAAAUCACUCGGCUA ..(((((....(((((((......))))).--------..(((((((...)))))))...))(((.----------(((((((((......)))))).))).)))...))))). ( -32.50) >DroEre_CAF1 4240 109 + 1 AAAGCCGCUUCGCGUGGCCAAGCUGAUCGGCUGAUCGGCUGAUC----UUGGCGAUCUUAGCGAUCUCAGCGAUCUUAGCGAGCUGCAGUCAGAUCGAUUA-AGCACUCGGCUA ..(((((((((((...(((((...((((((((....))))))))----)))))((((.....))))...))))....)))(((.(((((((.....)))).-.)))))))))). ( -43.90) >DroYak_CAF1 3944 113 + 1 AAAGCUGCUUCGCUUGGCCAAG-UGCUCUGCUGCUUCGCUGAUCGCGUUUCGUGAUCUAAGCGAUCUUAGCGAUCUUGGCGAUCUGCAGUCAGAUCGAUUAAAGCACUCGGCUA .((((......))))((((.((-(((((((((((.(((((((((((...((((.......)))).....))))))..)))))...)))).)))).........))))).)))). ( -46.00) >consensus AAAGCUGCUUCGCCUGGCCAAGCUGCUCGG________CUGAUCGCGUUUCGCGAUCUAAGCGAUC_________UUAGCGAUCUGCAGUCAGAUCGAUUAAAGCACUCGGCUA ..(((((..((((..(((...)))................((((((.....))))))...))))...............(((((((....)))))))...........))))). (-20.94 = -22.38 + 1.44)
Location | 1,941,113 – 1,941,210 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -22.90 |
Energy contribution | -24.78 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.04 |
Mean z-score | -2.75 |
Structure conservation index | 0.60 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1941113 97 - 22224390 UAGCCGAGUGAUUUAAUCGAUCUGACUGCAGAACGCUAA---------GAUCGCUUAGAUCGCGAAACGCGAUCAG--------ACGACCAGCUUGGCCAGGCGAAGCAGCUUC ..(((((((....(((.((((((....((.....))..)---------))))).)))(((((((...)))))))..--------.......))))))).((((......)))). ( -33.40) >DroSec_CAF1 3676 96 - 1 UAGCCGAGUGAUUUAAUCGAUCUUACUGCAGAUCGCUA----------GAUCGCUUAGAUCGCGAAACGCGAUCAG--------ACUAGCAGCUUGGCCAGGCGGAGCAGCUUU (((.(((((((((((..((((((......)))))).))----------)))))))).(((((((...))))))).)--------.)))((.((((.((...)).)))).))... ( -36.70) >DroEre_CAF1 4240 109 - 1 UAGCCGAGUGCU-UAAUCGAUCUGACUGCAGCUCGCUAAGAUCGCUGAGAUCGCUAAGAUCGCCAA----GAUCAGCCGAUCAGCCGAUCAGCUUGGCCACGCGAAGCGGCUUU ((((.((...((-((..((((((....((.....))..)))))).)))).)))))).((((.....----))))((((((((....)))).((((.((...)).)))))))).. ( -37.40) >DroYak_CAF1 3944 113 - 1 UAGCCGAGUGCUUUAAUCGAUCUGACUGCAGAUCGCCAAGAUCGCUAAGAUCGCUUAGAUCACGAAACGCGAUCAGCGAAGCAGCAGAGCA-CUUGGCCAAGCGAAGCAGCUUU ..((((((((((((....((((((....))))))((.....(((((..((((((..............)))))))))))....))))))))-)))))).((((......)))). ( -46.04) >consensus UAGCCGAGUGAUUUAAUCGAUCUGACUGCAGAUCGCUAA_________GAUCGCUUAGAUCGCGAAACGCGAUCAG________ACGAGCAGCUUGGCCAGGCGAAGCAGCUUU ..(((((((........(((((((....)))))))......................((((((.....)))))).................))))))).((((......)))). (-22.90 = -24.78 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:39 2006