Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,684,227 – 17,684,327 |
Length | 100 |
Max. P | 0.549295 |
Location | 17,684,227 – 17,684,327 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -24.36 |
Energy contribution | -25.88 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17684227 100 - 22224390 AGCUGAUUGUCGGUAAACAUCGGCACGGCCUGCAGCGGCAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA .((((..(((((((....)))))))))))((((.(((((....((.((((((.(...).))))))))((((((........))))))))))).))))... ( -33.20) >DroSec_CAF1 878 100 - 1 AGCUGAUUGUCGGUAAAAAUCGCCACGGCCUGCUGCGACAUCUGGCAAUGUUGGCCUCGAACGUUUUGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA .((((..((.((((....)))).))))))..(((((((((.(.(((.......)))...........((((((........))))))).))))))))).. ( -30.60) >DroSim_CAF1 1184 100 - 1 AGCUGAUUGUCGGUAAAAAUCGGCACGGCCUGCUGCGGCAUCUGGCAACGUUGGCCCCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA .((((..(((((((....)))))))))))..(((((((((....(((((((((....).))))))..((((((........))))))))))))))))).. ( -36.30) >DroEre_CAF1 880 97 - 1 AGCUGAUUGUCGGUAAACAUCGGCUUGGCCAGAUG---CAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUUAUCAGAAAGCGCUGUAGUAGCCA (((((((.((......)))))))))..((((((..---..)))))).....((((..(..(((...(((((((........))))))).))).)..)))) ( -30.50) >DroYak_CAF1 915 97 - 1 AGCUGAUGGUCGGUAAACAUCGGCUUGGCCAGAUG---CAUCUGGCAACCUUGGACUCGAACGUUUCGUUUUCGAUUAUAAGAAAGCGCUGUCGUAGUCA ((((((((.........))))))))..((((((..---..)))))).......(((((((......(((((((........)))))))...))).)))). ( -34.50) >consensus AGCUGAUUGUCGGUAAACAUCGGCACGGCCUGCUGCG_CAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA .((((..(((((((....)))))))))))..(((((((((....((((((((.(...).))))))..((((((........))))))))))))))))).. (-24.36 = -25.88 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:10 2006