Locus 7057

Sequence ID X_DroMel_CAF1
Location 17,672,806 – 17,672,913
Length 107
Max. P 0.908988
window11528

overview

Window 8

Location 17,672,806 – 17,672,913
Length 107
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -26.55
Consensus MFE -26.21
Energy contribution -25.78
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.99
SVM decision value 1.06
SVM RNA-class probability 0.908988
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17672806 107 - 22224390
UGAAAUCCAACUAUUCCGAGUGAUAUCACGUUCUUCACGUUUUGGCACUUUGCCAGAAAUUCUACGAUUUCGGUUGACGCGGAUGAUCGUUGGCUUUUCCACCUUUU-----
.((((.(((((...((((.(((....)))(((..((......((((.....))))((((((....))))))))..))).)))).....)))))..))))........----- ( -27.10)
>DroSec_CAF1 7184 107 - 1
UGAAAUCCAACUAUUCCGAGUGAUAUCACGUUCUUCACGUUUUGGCACUUUGCCAGAAAUUCUACGAUUUCGGUUGACGCGGAUGAUCGUUGGCUUUUCCACCUUUU-----
.((((.(((((...((((.(((....)))(((..((......((((.....))))((((((....))))))))..))).)))).....)))))..))))........----- ( -27.10)
>DroEre_CAF1 7586 105 - 1
UGAAAUCCAACUAUUCCGAGUGAUAUCACGUUCCUCACGUUUUGGCACUUUGCCAGAAAUUCUACGAUUUCGGUUAACGCGGAUGAUCGUUGGCUUUUCCACCUU-------
.((((.(((((...((((.((...(((((((.....))))..((((.....))))((((((....)))))))))..)).)))).....)))))..))))......------- ( -26.20)
>DroYak_CAF1 8368 112 - 1
UGAAAUCCAACUAUUUCGAGUGAUAUCACGUUCCUCACGUUUUGGCACUUUGCCAGAAAUUCUACGAUUUCGGUUAACGCGGAUGAUCGUUGGCUUUUCCACCUUAUUUAUU
.((((((.....((((((((.((........)))))......((((.....))))))))).....))))))((..((.((.(((....))).))))..))............ ( -25.80)
>consensus
UGAAAUCCAACUAUUCCGAGUGAUAUCACGUUCCUCACGUUUUGGCACUUUGCCAGAAAUUCUACGAUUUCGGUUAACGCGGAUGAUCGUUGGCUUUUCCACCUUUU_____
.((((.(((((...((((.(((....)))(((..((......((((.....))))((((((....))))))))..))).)))).....)))))..))))............. (-26.21 = -25.78 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:07 2006