Locus 7056

Sequence ID X_DroMel_CAF1
Location 17,670,488 – 17,670,583
Length 95
Max. P 0.653423
window11527

overview

Window 7

Location 17,670,488 – 17,670,583
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -24.04
Consensus MFE -18.42
Energy contribution -19.26
Covariance contribution 0.84
Combinations/Pair 1.19
Mean z-score -1.48
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.653423
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17670488 95 + 22224390
GUCUUGGGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACUGCAACAAAAUGGGCGGCAUAAACGACUAGAAGUGUUUAAAU------AAAGGCUGC
...(((..(((((((((((((.(((.....))).))))).)))))))).))).....(((((.(((((.((.....)))))))...------....))))) ( -23.50)
>DroSec_CAF1 4941 94 + 1
GUCUUUUGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACUGCAACAAAAUGGG-GGCACAAGCCAUAAAAGGUGCUUAAAU------GCAGGCAAU
(((((((((((((((((((((.(((.....))).))))).))))))).))))))....-(((....)))........(((......------))))))... ( -26.40)
>DroSim_CAF1 5689 94 + 1
GUCUUGGGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACUGCAACAAAAUGGG-GGCACAAAUCGUAAAAGGUGCUUAAAU------GCAGGCAAU
((((((..(((((((((((((.(((.....))).))))).)))))))).))).((..(-(((((............))))))..))------...)))... ( -24.60)
>DroEre_CAF1 5310 100 + 1
GUCUUGGGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACUGCGACAAAAUGAG-GGCGCGUAGCCAUAGAGGUGCUUAAACACAGAUUAAGGCAAC
(((((((((((((((((((((.(((.....))).))))).))))))).)).......(-(((((.(........).)))))).........)))))))... ( -26.70)
>DroYak_CAF1 6083 92 + 1
GUCUUGGGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACAGCAACAAAAUGGG-GGCACGAAGAAAUGGAGGU--------AGAGAGUAAGGCAAC
((((((.(((((((.(((((............)))))))))))).((..(......).-.))................--------......))))))... ( -19.00)
>consensus
GUCUUGGGUGCAGUGUGUUAUAAAUUAUUCAUUAAUGGCUGCACUGCAACAAAAUGGG_GGCACAAACCAAUAGAGGUGCUUAAAU______GAAGGCAAC
((((((..(((((((((((((.(((.....))).))))).))))))))...........(((((............)))))...........))))))... (-18.42 = -19.26 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:06 2006