Locus 7055

Sequence ID X_DroMel_CAF1
Location 17,666,641 – 17,666,747
Length 106
Max. P 0.691211
window11526

overview

Window 6

Location 17,666,641 – 17,666,747
Length 106
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 81.14
Mean single sequence MFE -17.93
Consensus MFE -10.38
Energy contribution -11.66
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -1.99
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.691211
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17666641 106 + 22224390
AG-UACACAAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUGCGGAUUACAACACUUCCCAUUCUUCCA---AGUAAUCUAAUUUUCAAUUUUAUGUUGGUUACUUCA------
((-((..((((....(((((((.((((......))))))))))).(((((((...................---.)))))))...............))))..))))...------ ( -18.35)
>DroSec_CAF1 1323 105 + 1
-G-UACACAAUUUUACAGUUUGCAUUGCUAAUACAGUCAAACUGCGGAUUACAACACUUCCCAUUCUUCCA---AGUAAUCAAAAUUUCAAUUUUAAGUUGCUUACUUCA------
-(-((..((((((..(((((((.((((......)))))))))))..((((((...................---.))))))..............))))))..)))....------ ( -17.65)
>DroSim_CAF1 2025 105 + 1
-G-UACACAAUUUUACAGUUUGCAUUGCUAAUACAGUCAAACUGCGGAUUACAACACUUCCCAUUCUUCCA---AGUAAUCAACAUUUCAAUUUUAAGUUGCUUACUUCA------
-(-((..((((((..(((((((.((((......)))))))))))..((((((...................---.))))))..............))))))..)))....------ ( -17.65)
>DroEre_CAF1 1483 107 + 1
AG-UACACAAUUUUACAGUUUGCAUUGGAAAUACAGGCAAACUUUGGAUUACGAA--GUUCCAUUCUUCCAAAAAGUAUUCAUAUUUUCAAUUUUAAGUUGGUUUCUUCU------
((-(((...........((((((.(((......)))))))))((((((....(((--......))).))))))..))))).......(((((.....)))))........------ ( -18.20)
>DroYak_CAF1 2147 116 + 1
AGCCACACCAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUUCGGAUUACCACAUCUUUCAUUCCUUCACAACGUAGUAAAAUGUUCUACUUCAAGUUGGUUACUCGUUACUAA
(((((...((((((((((((((.((((......))))))))))..(((................)))...........))))))))....((.....)))))))............ ( -17.79)
>consensus
AG_UACACAAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUGCGGAUUACAACACUUCCCAUUCUUCCA___AGUAAUCAAAUUUUCAAUUUUAAGUUGGUUACUUCA______
.......((((((..(((((((.((((......)))))))))))..((((((.......................))))))..............))))))............... (-10.38 = -11.66 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:06 2006