Locus 7054

Sequence ID X_DroMel_CAF1
Location 17,666,103 – 17,666,219
Length 116
Max. P 0.596406
window11525

overview

Window 5

Location 17,666,103 – 17,666,219
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.82
Mean single sequence MFE -26.94
Consensus MFE -18.70
Energy contribution -20.58
Covariance contribution 1.88
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.596406
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17666103 116 - 22224390
CACAAAUGUCAGCAAGUGCAUCUUAAUUACAUAUCUUGUUUAUCUAAGCAUCGCUAUAGAUAAGAUUCUCGGAAGAGG----ACGGAUUUUAAAAGAUAUGCAAAGAUGUUUGUAGAACU
.(((((((((.((....))..........((((((((.(((((((((((...))).)))))))).(((((....))))----)..........))))))))....)))))))))...... ( -32.40)
>DroSec_CAF1 788 116 - 1
CACAAAUGUCAGCAAGUGCAUCUUAAUU----AUCUUGUUUAUCUAAGCAUCGCUAUAGAUAAGAUUCUCGGAAGAGGGAACACGGAUUUUAAAAGAUAUGCAAAGAUGUUUGUAGAACU
.(((((((((.((....))(((((....----(((((((((((((((((...))).))))))...(((((....))))))))).)))).....))))).......)))))))))...... ( -29.00)
>DroSim_CAF1 1475 116 - 1
CACAAAUGUCAGCAAGUGCAUCUUAAUU----AUCUUGUUUAUCUAAGCAUCGCUAUAGAUAAGAUUCUCGGAAGAGGGAACACGGAUUUUAAAAGAUACGCAAAGAUGUUUGUACAGCU
.(((((((((.....(((.(((((....----(((((((((((((((((...))).))))))...(((((....))))))))).)))).....))))).)))...)))))))))...... ( -29.20)
>DroEre_CAF1 928 116 - 1
CACAAAUGUCAGGCAGUGCAUCUUAAUU----AUCUUGUUUAGAUAAGCAUCGCUAUAGAUAAGAUUCUCGGAAGAGGGAACUCGGAUUAUAAAUGAUUUUCAAAGAAGUUUAUAAAACU
......((((.(((.((((((((.(((.----.....))).))))..)))).)))...))))...(((((....))))).....(..((((((((..(((....))).))))))))..). ( -21.50)
>DroYak_CAF1 1573 116 - 1
CACAAAUGGCAGCAAGUGCAUCUCAAUU----AUCUUGUUUAUCUCAGCUCCGCUAAAGAUAAGAUUCUUGGAAGGGGCAACACGGAUUACAAAAGAUAUUUAAAGAAGUUUUCGCAUCU
........((.((....)).(((....(----(((((....((((..(((((....((((......))))....))))).....)))).....)))))).....))).......)).... ( -22.60)
>consensus
CACAAAUGUCAGCAAGUGCAUCUUAAUU____AUCUUGUUUAUCUAAGCAUCGCUAUAGAUAAGAUUCUCGGAAGAGGGAACACGGAUUUUAAAAGAUAUGCAAAGAUGUUUGUACAACU
.(((((((((.((....))(((((........(((((((((((...(((...))))))))))))))((((....))))...............))))).......)))))))))...... (-18.70 = -20.58 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:05 2006