Locus 7052

Sequence ID X_DroMel_CAF1
Location 17,665,006 – 17,665,106
Length 100
Max. P 0.753125
window11523

overview

Window 3

Location 17,665,006 – 17,665,106
Length 100
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 93.71
Mean single sequence MFE -32.57
Consensus MFE -30.19
Energy contribution -30.19
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.93
SVM decision value 0.48
SVM RNA-class probability 0.753125
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17665006 100 + 22224390
CUGUGCCUUCCAAACUGGUUGCUGCUCUUUUAACUGUGUAUUUGUGCAGCAGCAGUAG---CAGUUCAAGAA---GAAGCGGCAGAAUCUAGCUGCGGAAGAA---GAA
......(((((.(((((.((((((((.......(((..(....)..))).))))))))---)))))......---...(((((........))))))))))..---... ( -31.90)
>DroSim_CAF1 452 103 + 1
CUGUGCCUUCCAAACUGGUUGCUGCUCUUUUAACUGUGUAUUUGUGCAGCAGCAGUAG---CAGUUCAAGAAGAAGAAGCGGCAGAAUCUAGCUGCGGAAGAA---GAA
......(((((.(((((.((((((((.......(((..(....)..))).))))))))---)))))............(((((........))))))))))..---... ( -31.90)
>DroYak_CAF1 474 106 + 1
CUGUGCCUUCCAAACUGGUUGCUGCUCUUUUAAGUGUGUAUUUGUGCAGCAGCAGUAGCAGCAGUUCAAGAA---GAAGCGGCAGAAUCUAGCUGCGGAAGAAGGAGAA
((.(..(((((.((((((((((((((((..(((((....)))))...)).)))))))))..)))))......---...(((((........))))))))))..).)).. ( -33.90)
>consensus
CUGUGCCUUCCAAACUGGUUGCUGCUCUUUUAACUGUGUAUUUGUGCAGCAGCAGUAG___CAGUUCAAGAA___GAAGCGGCAGAAUCUAGCUGCGGAAGAA___GAA
......(((((..((((.(((((((.(................).)))))))))))......................(((((........))))))))))........ (-30.19 = -30.19 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:03 2006