Locus 7050

Sequence ID X_DroMel_CAF1
Location 17,660,878 – 17,660,984
Length 106
Max. P 0.654010
window11521

overview

Window 1

Location 17,660,878 – 17,660,984
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -27.95
Consensus MFE -27.16
Energy contribution -27.17
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.97
SVM decision value 0.25
SVM RNA-class probability 0.654010
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17660878 106 - 22224390
UGUGCGAGUUGUGUAUAUACGCAGAGUGACAAAAUUCUAAUAAGAAUUCUUGUUAUCGCUGCACUGCACUGCCGUUCGCCCUCUCUCCUUUUCACCCGCUAGCGGC
.((((.(((.(((....)))((((.(((((((((((((....)))))).)))))))..))))))))))).((((((.((..................)).)))))) ( -30.17)
>DroSec_CAF1 7368 106 - 1
UGUGCGAGUUGUGUAUAUACGCAGAGUGACAAAAUUCUAAUAAGAAUUCUUGUUAUCGCUGCACUGCACUGCCGUUCGCCCUCUCUCCUUCCCACCCGCUAGCGGC
.((((.(((.(((....)))((((.(((((((((((((....)))))).)))))))..))))))))))).((((((.((..................)).)))))) ( -30.17)
>DroEre_CAF1 5073 104 - 1
--UGCGAGUUGUGUAUAUACGCAGAAUGACAAAAUUCUAAUAAGAAUUCUUGUUAUCGCUGCACUGCACUGCCGUUCGUCCUCUCUCCUUCCCACCCGCUGUCGGC
--.(((.((.(((((.....((((.(((((((((((((....)))))).)))))))..))))..))))).)))))....................(((....))). ( -23.50)
>consensus
UGUGCGAGUUGUGUAUAUACGCAGAGUGACAAAAUUCUAAUAAGAAUUCUUGUUAUCGCUGCACUGCACUGCCGUUCGCCCUCUCUCCUUCCCACCCGCUAGCGGC
.((((.(((.(((....)))((((.(((((((((((((....)))))).)))))))..))))))))))).((((((.((..................)).)))))) (-27.16 = -27.17 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:01 2006