Locus 705

Sequence ID X_DroMel_CAF1
Location 1,936,934 – 1,937,036
Length 102
Max. P 0.522967
window1131

overview

Window 1

Location 1,936,934 – 1,937,036
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.63
Mean single sequence MFE -33.73
Consensus MFE -26.47
Energy contribution -26.70
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.78
SVM decision value -0.02
SVM RNA-class probability 0.522967
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1936934 102 - 22224390
UGCCCCGGAAUACGA-------------AACACGGAACACUCGACUCCGUAAAACUGCGGUUCGGACAAUUCCAAUUGGAUUUAUUCCGCUUGCCCAGCGCUCGAUUUUCUGGCU-----
....((((((..(((-------------...(((((.........)))))....(((.(((.((((....(((....))).....))))...))))))...)))...))))))..----- ( -28.10)
>DroSec_CAF1 3645 102 - 1
UGCCCCGGAAUACGA-------------AACACGGAACACUCGACUCCGUGAAACUGCGGUUCGGACAAUUCCAAUUGGACUUAUUCUGCUUGCCCAGCGCUCGACUUUCUGGCU-----
....((((((..(((-------------..((((((.........))))))...(((.(((.((((....(((....))).....))))...))))))...)))...))))))..----- ( -28.40)
>DroYak_CAF1 3773 120 - 1
UGCCCCGGAAUACGAACACGAAACACCAAACACGGAACACUCGACUCCGUGAAGCUGCGGUUCGGGCAAUUCCAAUUGGACUUGAUCCGCUUGCCCAGCGUUCGACUUGCUGGCUGGCUU
.(((((((....(((((.............((((((.........))))))..((((.(((.(((((((.(((....))).))).))))...)))))))))))).....))))..))).. ( -44.70)
>consensus
UGCCCCGGAAUACGA_____________AACACGGAACACUCGACUCCGUGAAACUGCGGUUCGGACAAUUCCAAUUGGACUUAUUCCGCUUGCCCAGCGCUCGACUUUCUGGCU_____
....((((((..(((...............((((((.........))))))...(((.(((.((((....(((....))).....))))...))))))...)))...))))))....... (-26.47 = -26.70 +   0.23) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006