| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,656,988 – 17,657,086 |
| Length | 98 |
| Max. P | 0.506112 |
| Location | 17,656,988 – 17,657,086 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.32 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17656988 98 + 22224390 UGAAGGAGCCGUCCGGUUCGCUGGAUAGCACCUUCUCAGCCGCCUCGCUGGACAGGGGACCCCAGUACCAGCCAUACUGCGAAA--------CAAG----------AUCAUUGAAC .(((((.((..(((((....)))))..)).))))).....(((...(((((((.(((...))).)).)))))......)))...--------(((.----------....)))... ( -34.10) >DroVir_CAF1 1111 100 + 1 UGAACGAGCCAUCCGGCUCAUUGGAGAGCACCUUCUCGGCGGCCUCGCUGGACAAUGGACCCCAGUACCAGCCGUACUGCAAAA---------------AGCAAAACUGAUUAA-U .....(((((....)))))....(((((....))))).(((((...(((((..........)))))....)))))..(((....---------------.)))...........-. ( -28.50) >DroSec_CAF1 3435 98 + 1 UGAAGGAGCCGUCCGGUUCGCUGGAUAGCACCUUCUCGGCCGCCUCGCUGGACAAGGGACCCCAGUACCAGCCAUACUGCGAAA--------CAAG----------AUCAUUGAAC .(((((.((..(((((....)))))..)).))))).....(((...(((((((..((....)).)).)))))......)))...--------(((.----------....)))... ( -32.50) >DroYak_CAF1 836 98 + 1 UGAAGGAGCCGUCCGGUUCGCUGGAUAGCACCUUCUCGGCCGCCUCGCUGGACAGGGGACCCCAGUACCAGCCAUACUGGAACG--------CAAG----------AUCAUGGAAC .(((((.((..(((((....)))))..)).)))))....(((....(((((((.(((...))).)).))))).......((.(.--------...)----------.)).)))... ( -36.10) >DroMoj_CAF1 850 116 + 1 UGAACGAGCCGUCCGGCUCGUUGGAAAGCACCUUCUCGGCGGCCUCGCUGGACAGUGGACCCCAGUACCAGCCAUACUGCAAAGGCGAACGAUAAGUUAAAUGAAUCUAAUUAAAU ..((((((((....))))))))(((...(.((((....((((....(((((((..(((...))))).)))))....)))).)))).)(((.....))).......)))........ ( -32.70) >DroAna_CAF1 888 109 + 1 UGAAGGAUCCAUCCGGCUCGCUAGAGAGUACCUUCUCGGCCGCUUCGCUGGACAAAGGACCCCAGUACCAGCCGUACUAUAUAAUCAG-GAAGAAGGU------AUAUAACUGGAA ...........((((((((....))).(((((((((((((.(....(((((..........)))))..).))))..((........))-..)))))))------))....))))). ( -29.30) >consensus UGAAGGAGCCGUCCGGCUCGCUGGAUAGCACCUUCUCGGCCGCCUCGCUGGACAAGGGACCCCAGUACCAGCCAUACUGCAAAA________CAAG__________AUCAUUGAAC .(((((.((..(((((....)))))..)).)))))..(((......(((((..........)))))....)))........................................... (-22.66 = -23.27 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:59 2006