Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,639,554 – 17,639,655 |
Length | 101 |
Max. P | 0.546807 |
Location | 17,639,554 – 17,639,655 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -21.05 |
Consensus MFE | -16.58 |
Energy contribution | -16.82 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.79 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17639554 101 - 22224390 CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG .(((((((((((((((((.((........))))))).........((((.((((-----(......)))))))))...........))).--)))))))))....... ( -20.80) >DroSec_CAF1 32547 101 - 1 CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG .(((((((((((((((((.((........))))))).........((((.((((-----(......)))))))))...........))).--)))))))))....... ( -20.80) >DroEre_CAF1 35413 108 - 1 CUUAUGGCACAUGGCAUGACGAAAAUUCUUGCAUGCUCAACACCGUUUAUAUCAGAUCAGAUCCCAUUGAUUAAGCCACUUCAUUACAUGAUGUGCUAUACCACAUCG ....((((...(((((((.(((......)))))))).))...............((((((......))))))..))))...........((((((......)))))). ( -24.00) >DroYak_CAF1 34174 101 - 1 CUUAUGCCACAUGGCAUGACGUGAAUUCUUGCAUGCUCAACAGCAUUUAUAUCG-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG .(((((((....))))))).(((.......(((((((....))))).......(-----(....))........))((((.........)--)))......))).... ( -18.60) >consensus CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA_____GAUCCCCUUGAUUAAGCCACUUCAUUACAUG__GUGCUAUAACACAUUG ..((((((((.(((((((.((........))))))).))....................((((.....))))....................))))))))........ (-16.58 = -16.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:56 2006