Locus 7044

Sequence ID X_DroMel_CAF1
Location 17,625,885 – 17,626,004
Length 119
Max. P 0.741386
window11512

overview

Window 2

Location 17,625,885 – 17,626,004
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 94.68
Mean single sequence MFE -37.08
Consensus MFE -29.46
Energy contribution -30.77
Covariance contribution 1.31
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.79
SVM decision value 0.45
SVM RNA-class probability 0.741386
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17625885 119 + 22224390
UGAAUAAAGUGCACGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGACGCAAAGUUAAUGAAUGUAAU
....(((..(((.....(((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....)).....)))...)))........... ( -32.90)
>DroSec_CAF1 21851 119 + 1
UGAAUAAAGUGCGCGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUUGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU
............((((((((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....))..))))).................. ( -40.60)
>DroEre_CAF1 24260 118 + 1
UGAAUAAAGUGCGCGGCGGC-UAAAGGCCGCUGCCGGAAAACUUGUUUUCCAUUCCAAUUUGGGCAUUUGGAAAAUGGCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU
....(((..(((((((((((-.....)))))((((((((((....)))))).((((((.........))))))...))))......((....)).)).))))...)))........... ( -39.00)
>DroYak_CAF1 23303 119 + 1
UGAAUAAACUGCACGGCGGCAUAAAGGUCCUGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGUCAUUUGGAAAAUGGCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU
......((((.....(((((....((((....(((((((((....)))))).((((((.........))))))...)))...))))((....))..)))))..))))............ ( -35.80)
>consensus
UGAAUAAAGUGCACGGCGGCAUAAAGGCCCCGGCCGGAAAACUUGUUUUCCAUUCCAAUUCGGCCAUUUGGAAAAUGCCAUUAUCUGCGCAAGCUCGCCGCAAAGUUAAUGAAUGUAAU
............((((((((((...(((....)))((((((....)))))).((((((.........)))))).))))).......((....))..))))).................. (-29.46 = -30.77 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:53 2006