Locus 7041

Sequence ID X_DroMel_CAF1
Location 17,608,094 – 17,608,186
Length 92
Max. P 0.713394
window11506

overview

Window 6

Location 17,608,094 – 17,608,186
Length 92
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 64.22
Mean single sequence MFE -27.22
Consensus MFE -9.76
Energy contribution -11.56
Covariance contribution 1.80
Combinations/Pair 1.24
Mean z-score -2.02
Structure conservation index 0.36
SVM decision value 0.38
SVM RNA-class probability 0.713394
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17608094 92 - 22224390
AUUAUUGCACGCCCCGAGUGUGCAGUUUGCAAUGG--GCCAUGUGCAAUAUGCAGUAUGC--------UAUAUGCAGC-AUGCAAUU-UAACAAUGUGCAAGCG---
.....(((((((.....)))))))(((((((.((.--......(((.....)))((((((--------(......)))-))))....-...))...))))))).--- ( -30.60)
>DroGri_CAF1 27307 83 - 1
AUUAUUGCGCCCACCGUGCA--CCAA-------GG--GCCAAGUGCCAUGUGCAACGACC--------AAUAUGCAACGAUGGAAUGGCCACAAUUUGCC-AC----
.....(((((.....)))))--....-------.(--((((....((((.((((......--------....))))...))))..)))))..........-..---- ( -21.00)
>DroSec_CAF1 5363 99 - 1
AUUAUUGCACGCCCCGAGUGUGCAGUUUGCAAUGG--GCCAUAUGCAAUAUGCAGUAUGCCAUGUACAUAUAUGCAGC-AUGCAAUU-CAACAAUGUGCA-GCA---
...(((((((((.....))))))))).(((....(--((....(((.....)))....))).(((((((...(((...-..)))...-.....)))))))-)))--- ( -28.40)
>DroEre_CAF1 6851 92 - 1
AUUAUUGCACGCCCCGAGUGUGCAGUUUGCAAUUGGGCCCAUAUGCAACAUGCAGUAUGC--------UAUAUGCAGC-AUGCAAUU-C-ACAAUGUGCA-GAG---
....(((((((....((((.((((..(((((..((....))..)))))..))))((((((--------(......)))-)))).)))-)-....))))))-)..--- ( -29.80)
>DroAna_CAF1 29074 78 - 1
AUUAUUGCACACGCUGGGUG--CAAU----------------GUGCAACGUGCAACGUGC--------AACGUGCAAC-UUGCAACU-U-GCAACGUCCGAGAGACG
..((((((((.......)))--))))----------------)(((((..(((((..(((--------.....)))..-)))))..)-)-))).((((.....)))) ( -26.30)
>consensus
AUUAUUGCACGCCCCGAGUGUGCAGUUUGCAAUGG__GCCAUGUGCAAUAUGCAGUAUGC________UAUAUGCAGC_AUGCAAUU_C_ACAAUGUGCA_GCG___
...(((((((((.....))))))))).................((((...((((.((((.........))))))))....))))....................... ( -9.76 = -11.56 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:48 2006