| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,602,656 – 17,602,758 |
| Length | 102 |
| Max. P | 0.567619 |
| Location | 17,602,656 – 17,602,758 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.09 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17602656 102 + 22224390 UUUUAUUUAAUCAGUGUGCAAAGACGCGUCGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAACAA------------------ACACACAUAUUUUUU .............(((((........(((((..((((....))))..)))))(((......))).......................------------------.)))))......... ( -20.90) >DroSec_CAF1 21655 102 + 1 UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAGGAA------------------ACACACAUAUUUUUU .((((((((....((((......)))).((((((.(((...((((.....))))..))).)))))).))))))))........(...------------------.)............. ( -23.10) >DroYak_CAF1 32410 120 + 1 UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAACACAUAAAUUAAUACAAAUAAUAACCACAACACCACACACUCACACAAAUAUUUUUU ...(((((....(((((((......))(((((..(((((.(((.((((...))).).)))..........(((......)))..)))))))))).....))))).....)))))...... ( -20.80) >consensus UUUUAUUUAAUCAGUGUGCAAAGACGCGUUGUUUGGUUAACGCCGGCCGACGGCUCAGCGAAGCAAAUAAAUAAAUACAAAUAACAA__________________ACACACAUAUUUUUU .((((((((....((((......))))...((((.(((...((((.....))))..))).))))...))))))))............................................. (-18.85 = -18.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:47 2006