Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,930,419 – 1,930,539 |
Length | 120 |
Max. P | 0.579338 |
Location | 1,930,419 – 1,930,539 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -46.01 |
Consensus MFE | -29.25 |
Energy contribution | -29.25 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.38 |
Mean z-score | -1.21 |
Structure conservation index | 0.64 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1930419 120 + 22224390 UGGCUUUCGGCCGCAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCUUGCCGGUAAAUAUUGCUAUUGACAUGCAACAGACGGCUCAACGCGAGAUACAUCGUUUGUGGCCGU .......((((((((((((((((((.(((((..(((((....).)))).))))).))))))...........))))..))).(((((((((((.....))).....))))))))))))). ( -45.00) >DroVir_CAF1 1076 120 + 1 AUGACUUCGGCCAGUUCCGAUCAGUGAAAGGUGCCGCCUACUAUGCCGGCCGUUUGCCAAAGUGCAUUGCUUUUGAUAUGCAGCAUUCGGCGGAGCGUGAAAUACAUCGCCUCUGGCCGG .......(((((((...((((..(((..(((.....)))..((((((.((((..(((.....(((((..(....)..))))))))..)))).).)))))...)))))))...))))))). ( -43.00) >DroSim_CAF1 2090 120 + 1 UGGCUUUCGGCAACAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCUUGCCAGUAAAUAUUGCGAUUGACAUGCAACAGUCGGCGCAACGCGAGAUACAUCGUAUGUGGCCGU .......((((.((((......(((.(((((..(((((....).)))).))))).)))........(((((.(((((........)))))))))).((((......)))))))).)))). ( -42.30) >DroEre_CAF1 1940 120 + 1 UAGAUUUCGGCCGCAUCAACUUGAUCAGCGGAGUGGCCUUCUGCGCCGGCUGCCUGCCCAUAAAUAUUGCGAUAGAUAUGAAGAAGACGGCGCAACGCGAGAUCCAUCGCCUGUGGCCGG .......((((((((.......((((.((((((....))))(((((((((.....)))((((..(((....)))..))))........))))))..))..)))).......)))))))). ( -42.04) >DroYak_CAF1 554 120 + 1 UGGAUUUCGGCCGCAUCAACUUGGUCAGCGGAGUGGGCUUCUGCGCCGGCCGCCUGCCCGUGAAUAUUGCGAUAGACAUGCAGCAGACGGCGCAGCGCGAGAUCCAUCGUCUGUGGCCGG .......((((((((...((((.(....).))))((..(((.((((.(((((.((((.((((..(((....)))..))))..)))).)))).).)))))))..))......)))))))). ( -50.20) >DroAna_CAF1 1106 120 + 1 UGGACUUUGGCGAGCUGCAGAUGGUGGAGGGAUUUGCUUUUUGCGCCGGAAGGCUGCCAAAGAGCAUUGCCCUGGACAUGCAGCAGACGGCUCAGCGCGAAAUACAUCGCUUGUGGCCGC .............((((((....((..((((...(((((((((((((....))).).)))))))))...))))..)).))))))...((((((((.((((......))))))).))))). ( -53.50) >consensus UGGAUUUCGGCCACAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCCUGCCAAUAAAUAUUGCGAUUGACAUGCAGCAGACGGCGCAACGCGAGAUACAUCGCCUGUGGCCGG .......(((((((........(((((......)))))...(((((((((.....)))........((((.........)))).....))))))..((((......))))..))))))). (-29.25 = -29.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:35 2006