Locus 7039

Sequence ID X_DroMel_CAF1
Location 17,601,784 – 17,601,899
Length 115
Max. P 0.832097
window11504

overview

Window 4

Location 17,601,784 – 17,601,899
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 99.42
Mean single sequence MFE -26.59
Consensus MFE -25.72
Energy contribution -26.05
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.97
SVM decision value 0.72
SVM RNA-class probability 0.832097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17601784 115 - 22224390
CCAGCUGAGAGCUUCGCCAUAACCAUACCAUAAAUGGCAAUUUUCCUUGCGACAAAUAGAAAAUGAAAAUUCGUUAACAAUUAAUUAGCCAAAAGGGAGAAGCGGCUGCUUAGCC
...((((((((((.((((((.............)))))..((((((((((...........(((((....)))))............))...)))))))).).)))).)))))). ( -27.52)
>DroSec_CAF1 20783 115 - 1
CCAGCUGAGAGCUUCGCCAUAACCAUACCAUAAAUGGCAAUUUUCCUUGCGACAAAUAGAAAAUGAAAAUUCGUUAACAAUUAAUUAGCCAAAAGGGAGAAGCGGCUGCUUAGCC
...((((((((((.((((((.............)))))..((((((((((...........(((((....)))))............))...)))))))).).)))).)))))). ( -27.52)
>DroYak_CAF1 31486 115 - 1
CCAGCUGAAAGCUUCGCCAUAACCAUACCAUAAAUGGCAAUUUUCCUUGCGACAAAUAGAAAAUGAAAAUUCGUUAACAAUUAAUUAGCCAAAAGGGAGAAGCGGCUGCUUAGCC
...(((((.((((.((((((.............)))))..((((((((((...........(((((....)))))............))...)))))))).).))))..))))). ( -24.72)
>consensus
CCAGCUGAGAGCUUCGCCAUAACCAUACCAUAAAUGGCAAUUUUCCUUGCGACAAAUAGAAAAUGAAAAUUCGUUAACAAUUAAUUAGCCAAAAGGGAGAAGCGGCUGCUUAGCC
...((((((.((((((((((.............)))))....((((((((...........(((((....)))))............))...))))))))))).....)))))). (-25.72 = -26.05 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:46 2006