Locus 7038

Sequence ID X_DroMel_CAF1
Location 17,601,317 – 17,601,421
Length 104
Max. P 0.599033
window11503

overview

Window 3

Location 17,601,317 – 17,601,421
Length 104
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -30.34
Consensus MFE -22.83
Energy contribution -23.05
Covariance contribution 0.22
Combinations/Pair 1.03
Mean z-score -2.08
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.599033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17601317 104 - 22224390
CUGAAUGGCAUCUCCCAACUUUUUU---UGGGCGGCUGCUGUGCUGCGCAUGAAUCAUUCAUUU------UCAUUUUAUCGAGCGCCAGUCGG---CCACUGCCACUUAACCCAUU
.(((.(((((...(((((......)---)))).((((((((((((.((.(((((..........------....))))))))))).))).)))---))..))))).)))....... ( -32.14)
>DroSec_CAF1 20328 103 - 1
CUGAAUGACUUCUCCCAACUUU-UU---UGGGCGGCUGCUGUGCUGCGCAUGAAUCAUUCAUUU------UCAUUUUAUCGAGCGCCAGUCGG---CCACUGCCACUUAACCCAUU
...((((......(((((....-.)---)))).((((((((((((.((.(((((..........------....))))))))))).))).)))---))..............)))) ( -25.24)
>DroYak_CAF1 31040 116 - 1
CUGAAUGGCAUCUGCCCACUUUUUUUUUGGGGCGGCUGCUGUGCUGCGCAUGAAUCAUUCAUUUUCAUUUUCAUUUUAUCGAGCGCCAGUCGAGGAGCAGUGCCACUUAACCCAUU
.(((.(((((.((((((.((((......))))((((((..(((((.((.(((((....................)))))))))))))))))).)).))))))))).)))....... ( -33.65)
>consensus
CUGAAUGGCAUCUCCCAACUUUUUU___UGGGCGGCUGCUGUGCUGCGCAUGAAUCAUUCAUUU______UCAUUUUAUCGAGCGCCAGUCGG___CCACUGCCACUUAACCCAUU
.(((.((((....((((...........))))((((((..(((((.((.(((((....................)))))))))))))))))).........)))).)))....... (-22.83 = -23.05 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:45 2006