Locus 7037

Sequence ID	X_DroMel_CAF1
Location	17,598,232 – 17,598,332
Length	100
Max. P	0.948198

overview

Window 1

Location	17,598,232 – 17,598,332
Length	100
Sequences	4
Columns	100
Reading direction	forward
Mean pairwise identity	99.00
Mean single sequence MFE	-23.10
Consensus MFE	-23.10
Energy contribution	-23.10
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-2.75
Structure conservation index	1.00
SVM decision value	1.38
SVM RNA-class probability	0.948198
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17598232 100 + 22224390
GGUUAUGCUCUAUCUGUCCGAAUGACGGCCAAUUAACACGCUCGUUAAUUGGACCAACUCAAAUCGAACUCACAACUGUCACAAUUCAGACUGCAUCUAU
....((((....((((......(((((((((((((((......))))))))).))...((.....))..........)))).....))))..)))).... ( -23.10)
>DroSec_CAF1 17712 100 + 1
GGUUAUGCUCUAUCUGUCCCAAUGACGGCCAAUUAACACGCUCGUUAAUUGGACCAACUCAAAUCGAACUCACAACUGUCACAAUUCAGACUGCAUCUAU
....((((....((((......(((((((((((((((......))))))))).))...((.....))..........)))).....))))..)))).... ( -23.10)
>DroSim_CAF1 36352 100 + 1
GGUUAUGCUCUAUCUGUCCCAAUGACGGCCAAUUAACACGCUCGUUAAUUGGACCAACUCAAAUCGAACUCACAACUGUCACAAUUCAGACUGCAUCUAU
....((((....((((......(((((((((((((((......))))))))).))...((.....))..........)))).....))))..)))).... ( -23.10)
>DroEre_CAF1 23943 100 + 1
GGUUAUGCUCUAUCUGUCCCAAUGACGGCCAAUUAACACGCUCGUUAAUUGGACCAACUCAAAUCGAACUCACAACUGUCACAAUUCAGACUGCAUUUAU
....((((....((((......(((((((((((((((......))))))))).))...((.....))..........)))).....))))..)))).... ( -23.10)
>consensus
GGUUAUGCUCUAUCUGUCCCAAUGACGGCCAAUUAACACGCUCGUUAAUUGGACCAACUCAAAUCGAACUCACAACUGUCACAAUUCAGACUGCAUCUAU
....((((....((((......(((((((((((((((......))))))))).))...((.....))..........)))).....))))..)))).... (-23.10 = -23.10 +  -0.00)

alignment

secondary structure

dotplot

Window 2

Location	17,598,232 – 17,598,332
Length	100
Sequences	4
Columns	100
Reading direction	reverse
Mean pairwise identity	99.00
Mean single sequence MFE	-28.95
Consensus MFE	-28.48
Energy contribution	-28.48
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.84
Structure conservation index	0.98
SVM decision value	0.28
SVM RNA-class probability	0.667823
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17598232 100 - 22224390
AUAGAUGCAGUCUGAAUUGUGACAGUUGUGAGUUCGAUUUGAGUUGGUCCAAUUAACGAGCGUGUUAAUUGGCCGUCAUUCGGACAGAUAGAGCAUAACC
....((((.(((........)))..((((..((((((..(((..(((.((((((((((....)))))))))))))))).))))))..)))).)))).... ( -30.40)
>DroSec_CAF1 17712 100 - 1
AUAGAUGCAGUCUGAAUUGUGACAGUUGUGAGUUCGAUUUGAGUUGGUCCAAUUAACGAGCGUGUUAAUUGGCCGUCAUUGGGACAGAUAGAGCAUAACC
....((((.(((((....((((((((((......)))))......((.((((((((((....))))))))))))))))).....)))))...)))).... ( -28.50)
>DroSim_CAF1 36352 100 - 1
AUAGAUGCAGUCUGAAUUGUGACAGUUGUGAGUUCGAUUUGAGUUGGUCCAAUUAACGAGCGUGUUAAUUGGCCGUCAUUGGGACAGAUAGAGCAUAACC
....((((.(((((....((((((((((......)))))......((.((((((((((....))))))))))))))))).....)))))...)))).... ( -28.50)
>DroEre_CAF1 23943 100 - 1
AUAAAUGCAGUCUGAAUUGUGACAGUUGUGAGUUCGAUUUGAGUUGGUCCAAUUAACGAGCGUGUUAAUUGGCCGUCAUUGGGACAGAUAGAGCAUAACC
....((((.(((((....((((((((((......)))))......((.((((((((((....))))))))))))))))).....)))))...)))).... ( -28.40)
>consensus
AUAGAUGCAGUCUGAAUUGUGACAGUUGUGAGUUCGAUUUGAGUUGGUCCAAUUAACGAGCGUGUUAAUUGGCCGUCAUUGGGACAGAUAGAGCAUAACC
....((((.(((((....((((((((((......)))))......((.((((((((((....))))))))))))))))).....)))))...)))).... (-28.48 = -28.48 +  -0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:44 2006