Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,596,070 – 17,596,189 |
Length | 119 |
Max. P | 0.984882 |
Location | 17,596,070 – 17,596,189 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.16 |
Mean single sequence MFE | -38.66 |
Consensus MFE | -37.22 |
Energy contribution | -37.62 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.96 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17596070 119 - 22224390 GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU (((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10) >DroSec_CAF1 15522 119 - 1 GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU (((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10) >DroSim_CAF1 34201 119 - 1 GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU (((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10) >DroEre_CAF1 21898 119 - 1 GCCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU ((...((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....)))))))))...... ( -36.40) >DroYak_CAF1 27146 120 - 1 GCCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCUUUUGUGGUGGCCGCCUCCUU ((...((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((......)))))))))...... ( -36.60) >consensus GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU_UUGUGGUGGCCGCCUCCUU (((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((......))))))))))..... (-37.22 = -37.62 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:43 2006