| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,595,699 – 17,595,812 |
| Length | 113 |
| Max. P | 0.515081 |
| Location | 17,595,699 – 17,595,812 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.79 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -15.01 |
| Energy contribution | -16.05 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17595699 113 + 22224390 CUCCACUGCGAUUUAUACCA------UUCCCAGUGCAAUUGCAAACCGCACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCAGCUGAA-CAGCCCCUUUUCGGCCAGUUCAA ...(((((.((.........------.)).)))))....(((.....))).((((.((((.....(((((.....)))))....(((...(((...-.))).....)))))))))))... ( -27.60) >DroSec_CAF1 15151 116 + 1 CUCCACUGCGAUUUAUCCCAUUCCCAUUCCCAGUGCAAUUGCAACCCGCACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCA---GAA-CUGCCCCUUUCCGGCCAGUUCAA .........((((((........(((......((((...........))))....))).......(((((.....)))))...)))))).---(((-(((.((......)).)))))).. ( -26.70) >DroSim_CAF1 33827 116 + 1 CUCCACUGCGAUUUAUCCCAUUCCCAUUCCCAGUGCAAUUGCAAACCGCACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCA---GAA-CUGCCCCUUUCCGGCCAGUUCAA .........((((((........(((......((((...........))))....))).......(((((.....)))))...)))))).---(((-(((.((......)).)))))).. ( -26.70) >DroEre_CAF1 21531 108 + 1 CUCCAGUGCGAUUCAGC-------CAUUCCCAGUGCAAUUGCAAACCACACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCA---GAA--CGCCCCUUGCCAGCCAGCUGAA ...((((((((((((((-------((.......(((....)))............))))......(((((.....)))))...)))))).---...--.((.....))..))..)))).. ( -25.31) >DroYak_CAF1 26792 103 + 1 CUCCAAUGCCAUUUAUC-------CAUUCCCAGUGUAAUUGCAAACCGCACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCA---GAAACUGCCCCCUUCCCGCC------- .......((........-------........((((...........)))).....(((......(((((.....)))))..(((...))---).....)))........)).------- ( -14.10) >consensus CUCCACUGCGAUUUAUCCCA____CAUUCCCAGUGCAAUUGCAAACCGCACAACUUGGCCUCAUCGACCGCAAAUCGGUCAACUGAAUCA___GAA_CUGCCCCUUUCCGGCCAGUUCAA ......((((((((((................))).)))))))...........((((((.....(((((.....))))).......((....))..............))))))..... (-15.01 = -16.05 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:42 2006