Locus 7033

Sequence ID X_DroMel_CAF1
Location 17,595,007 – 17,595,117
Length 110
Max. P 0.999838
window11495

overview

Window 5

Location 17,595,007 – 17,595,117
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.27
Mean single sequence MFE -45.30
Consensus MFE -43.74
Energy contribution -43.50
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.24
Structure conservation index 0.97
SVM decision value 4.21
SVM RNA-class probability 0.999838
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17595007 110 + 22224390
UCGUUUGUCGGCUUGCAGCGGCGCAGCGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGCCAUCUUCAUCU----------
..((((((..(((((((..(((.((((((((..(((......)))...)))))))).))).....)))))))..)))))).((.(((.....)))..))...........---------- ( -44.70)
>DroSec_CAF1 14469 110 + 1
UCGUUUGUCGGCUUGCAGCGGCGCAGCGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGCCAUCUUCAUCU----------
..((((((..(((((((..(((.((((((((..(((......)))...)))))))).))).....)))))))..)))))).((.(((.....)))..))...........---------- ( -44.70)
>DroSim_CAF1 33148 110 + 1
UCGUUUGUCGGCUUGCAGCGGCGCAGCGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGCCAUCUUCAUCU----------
..((((((..(((((((..(((.((((((((..(((......)))...)))))))).))).....)))))))..)))))).((.(((.....)))..))...........---------- ( -44.70)
>DroEre_CAF1 20961 113 + 1
UCGUUUGUCGGCUUGCAGCGGCGCAGUGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGC-AUCUGCAUCUUCAU------
..((((((..(((((((..(((.(((..(((..(((......)))...)))..))).))).....)))))))..)))))).(((((.(((.......))-))))))........------ ( -47.40)
>DroYak_CAF1 26066 120 + 1
UCGUUUGUCGGCUUGCAGCGGCGCAGUGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGCCAACUUCAUCUUCAUCCUCAU
..(((.(((((((((((((.(((((.((((((.(((((((.((....))))).))))))))))..)))..(((....))).)).).))))))))).))).)))................. ( -45.00)
>consensus
UCGUUUGUCGGCUUGCAGCGGCGCAGCGGGGCGUCGGAGGUGUGAAAACCCUGCUGGGUCUUAAAUGCAAGCUAAUAAGCAGCGGACUGCAAGUCAGGCCAUCUUCAUCU__________
..((((((..(((((((..(((.((((((((..(((......)))...)))))))).))).....)))))))..)))))).((.(((.....)))..))..................... (-43.74 = -43.50 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:38 2006