| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,594,433 – 17,594,631 |
| Length | 198 |
| Max. P | 0.792779 |
| Location | 17,594,433 – 17,594,551 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 95.73 |
| Mean single sequence MFE | -29.39 |
| Consensus MFE | -26.04 |
| Energy contribution | -26.29 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17594433 118 + 22224390 UAUUUUUUUUUUUUAGCCAGAAAUCGUCGGAGUCAGCAAAAAUCGAAGGAGUCGCUGCCUCCGCACACAGAGAGAAAAAAAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAA ...............(((.......(((((((.((((.....((....))...)))).))))).)).(((.(((.........(((.......))).......)))))).)))..... ( -28.59) >DroSec_CAF1 13779 116 + 1 UAUUUCUUUUUUUUAGACAGAAAUCGUCGGAGUCAGCAAAAAUCGAAGGAGUCGCUGCCUCCGCACACAGAGAGAAA--AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAA ..(((((((((....((((....).)))((((.((((.....((....))...)))).))))......)))))))))--................((((...))))....(....).. ( -27.60) >DroSim_CAF1 32419 116 + 1 UAUUUCUCUUUUUUAGCCAGAAAUCGUCGGAGUCAGCAAAAAUCGAAGGAGUCGCUGCCUCCGCACACAGAGAGAAA--AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAA ...............(((.......(((((((.((((.....((....))...)))).))))).)).(((.(((...--....(((.......))).......)))))).)))..... ( -29.74) >DroEre_CAF1 20411 115 + 1 UAAUUUU-UUCUUUAGCCAGAAAUCGUCGGAGUCAGCAAAAAUCGGAGGAGUCGCUGGCUCCGCACACAGAGAGAAA--AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAA .......-.......(((.......((((((((((((.....((....))...)))))))))).)).(((.(((...--....(((.......))).......)))))).)))..... ( -31.64) >consensus UAUUUCUUUUUUUUAGCCAGAAAUCGUCGGAGUCAGCAAAAAUCGAAGGAGUCGCUGCCUCCGCACACAGAGAGAAA__AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAA ...............(((.......(((((((.((((.....((....))...)))).))))).)).(((.(((.........(((.......))).......)))))).)))..... (-26.04 = -26.29 + 0.25)
| Location | 17,594,511 – 17,594,631 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.35 |
| Mean single sequence MFE | -33.04 |
| Consensus MFE | -22.67 |
| Energy contribution | -24.36 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17594511 120 + 22224390 AAAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGGCGCAACACAACAGCGGCAACAGCUGCACUGAGCGAAAAAAUGGUCAAGUGCUGUGGCCACAAC ................((.((..(((.((((((....).(((......))).))))).))).((((..((((....).)))(((((((.((......)).)).))))))))))))).... ( -31.50) >DroSec_CAF1 13856 119 + 1 -AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGGCGCAACACAACAGCGGCAACAGCUGCACUGAGCGAAAAAAUGGUCAAGUGGUCAAGCCACAAC -..............((((.((.(((.((((((....).(((......))).))))).)))........(((((....)))))..............)).))))((((.....))))... ( -32.00) >DroSim_CAF1 32496 119 + 1 -AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGGCGCAACACAACAGCGGCAACAGCUGCACUGAGCGAAAAAAUGGUCAAGUGCUGUGGCCACAAC -...............((.((..(((.((((((....).(((......))).))))).))).((((..((((....).)))(((((((.((......)).)).))))))))))))).... ( -31.50) >DroEre_CAF1 20487 118 + 1 -AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGCCGCAACGAAACAGCGGCAACUGCUGCACUGAGCGAAAAAGUGCUCAA-UGCGGUGGCCGCAAC -................((((...)))).((((((..........((.....)).(((((.........)))))....((((((.((((((......)))))).-)))))).)))))).. ( -41.20) >DroYak_CAF1 25205 107 + 1 -AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGCCGCAGCAAAACAGCGGCAGCAGCUGCACUGAGCGAAAAACUCUUG------------CAAAAC -..................((((.((((.((((((..........((.....)).(((((.........)))))....))))))..))))((.....)))))------------)..... ( -29.00) >consensus _AAACCAAUUAAUAUUUGAGCAAUGCUCCUGCGGCAACAAUUAAAGUCAAUGGCAGGCGCAACACAACAGCGGCAACAGCUGCACUGAGCGAAAAAAUGGUCAAGUGCUGUGGCCACAAC ..............((((..((.(((.((((((....).(((......))).))))).)))........(((((....)))))..))..))))....((((((.......)))))).... (-22.67 = -24.36 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:37 2006