Locus 7028

Sequence ID X_DroMel_CAF1
Location 17,592,035 – 17,592,154
Length 119
Max. P 0.998345
window11482

overview

Window 2

Location 17,592,035 – 17,592,154
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 72.32
Mean single sequence MFE -23.47
Consensus MFE -15.57
Energy contribution -17.45
Covariance contribution 1.88
Combinations/Pair 1.24
Mean z-score -2.31
Structure conservation index 0.66
SVM decision value 3.07
SVM RNA-class probability 0.998345
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17592035 119 + 22224390
AGGAACGCAUUAUUAACUUAGAAACUAAUUACAAAAUGUGGCAAUCAGUUUAGUUUCUUAAACUCAGUAGAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUAAAU
.(((((((((((((((((.(((((((((((((.....))))........)))))))))...((((....)))).....))).(((....))).........)))))))))))))).... ( -28.50)
>DroSec_CAF1 11457 98 + 1
AGGAACGCAUUAUUAACUUAGAAACAAAUUAAA---------------------UUUUUAAUCUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU
.(((((((((((((((((.(((...(((.....---------------------.)))...))).)))..((((((......(((....)))..)))))).)))))))))))))).... ( -21.80)
>DroSim_CAF1 30056 119 + 1
AGGAACGCAUUAUUAACUUAGAAACGAAUUAAAAAAUAUGGCAAUCACAUUAGUUUCUUAAUUUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU
.((((((((((((((..........(((((((.(((((((.......)))..)))).)))))))......((((((......(((....)))..)))))).)))))))))))))).... ( -23.80)
>DroYak_CAF1 22432 100 + 1
-------UAUUAUUAACUAAGUAGCUAGCAAAA------GGCAAUUAGAUUAGUUGCUUAAACUCAGCAAGGUGUUUCACUA--UAAU----GUUAUAUUAUAAUAGUGCUUUCUGCUU
-------...........((((((..(((...(------((((((((...)))))))))...................((((--(.((----(......))).))))))))..)))))) ( -19.80)
>consensus
AGGAACGCAUUAUUAACUUAGAAACUAAUUAAA______GGCAAUCAGAUUAGUUUCUUAAACUCAGUAAAGUGUUUUAGUAGAUAAUCAUCAUAACAUUGUAAUAGUGCGUUCUGAAU
.((((((((((((((....(((((((((.....................)))))))))............((((((..................)))))).)))))))))))))).... (-15.57 = -17.45 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:26 2006