Locus 7027

Sequence ID X_DroMel_CAF1
Location 17,590,950 – 17,591,062
Length 112
Max. P 0.950027
window11481

overview

Window 1

Location 17,590,950 – 17,591,062
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.39
Mean single sequence MFE -33.52
Consensus MFE -29.56
Energy contribution -30.40
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.88
SVM decision value 1.40
SVM RNA-class probability 0.950027
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17590950 112 - 22224390
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGCCGGGAAAUGGGAAAUGGAA------AAAUGGAGUG--GGA
(((((((((....)))))))..........(((..((.((((.(((((((.(((((.....)))).)(....)...))))))).)))).))...(....------)......)))--)). ( -34.20)
>DroSec_CAF1 10324 104 - 1
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGCCGGGAA-------AUGGA-------AAAUGGAGUG--AGA
..(((((((....))))))).....(((.((.((.((.((((.(((((((.(((((.....)))).)(....)...))))))).))-------)))).-------...)))).))--).. ( -31.30)
>DroSim_CAF1 28942 111 - 1
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGCCGGGAAAUGGGAAAUGGA-------AAAUGGAGUG--GGA
(((((((((....)))))))..........(((..((.((((.(((((((.(((((.....)))).)(....)...))))))).)))).))...(...-------.).....)))--)). ( -34.20)
>DroEre_CAF1 10197 113 - 1
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGCCGGGAAAUGGGAAGUGGAAAGUGGGAAGUG-------GGA
(((((((((....))))))).........((((..((.((((.(((((((.(((((.....)))).)(....)...))))))).)))).))..)))).....))......-------... ( -37.80)
>DroYak_CAF1 20966 120 - 1
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGUGGGGAAAUGGGAAAUGGGAAAUGGAAAAUGGAGUGGGGGA
(((((((((....))))))).........((.((.((.((((.((.((((.(((((.....)))).)(....)...)))).)).)))).))...)).))...............)).... ( -30.10)
>consensus
CCGUGCGGCUCGAGUCGCACUUUAAUCAAUCGCAACCGAUUUGUCGGCUUAGCAUGUACAACAUGACGUAAACAAAGAGCCGGGAAAUGGGAAAUGGAA______AAAUGGAGUG__GGA
(((((((((....)))))))...............((.((((.(((((((.(((((.....)))).)(....)...))))))).)))).))....))....................... (-29.56 = -30.40 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:25 2006