Locus 7026

Sequence ID X_DroMel_CAF1
Location 17,590,683 – 17,590,796
Length 113
Max. P 0.998122
window11480

overview

Window 0

Location 17,590,683 – 17,590,796
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.65
Mean single sequence MFE -30.50
Consensus MFE -27.86
Energy contribution -28.18
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -2.04
Structure conservation index 0.91
SVM decision value 3.01
SVM RNA-class probability 0.998122
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17590683 113 + 22224390
CAGUGGCCAAAA-------ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGUGUGCCACUUUACAGGCAA
.((((((.....-------((((.(((.((((....(((((......)))))..))))..)))....(((((.........)))))..............)))))))))).......... ( -28.60)
>DroSec_CAF1 10057 113 + 1
CAGUGGCCAAAA-------ACAUAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA
.....(((....-------.....(..((((.....))))..)(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -32.80)
>DroSim_CAF1 28675 113 + 1
CAGUGGCCAAAA-------ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA
.....(((....-------.....(..((((.....))))..)(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -32.80)
>DroEre_CAF1 9926 113 + 1
CAGUGGCCAAAA-------ACACAAAUCCCGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA
.....(((....-------.........(((......)))...(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -29.50)
>DroYak_CAF1 20666 120 + 1
CAGUGGCCAAAAACCCAAAACACAAAUCCGGUAAUCCUCGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCCAAACAACUAUUAGCGGGCCACUUUACAGGCAA
.....(((.....................(((.......))).(((((((((((..((........))((((.........))))..........))))))))))).........))).. ( -28.80)
>consensus
CAGUGGCCAAAA_______ACACAGAUCCGGUAAUCCCGGCCCGCCCGCUGGUAACCGUCAUCAUUCGGCGUCAUCUUCUCACGCUCUAAACAACUAUUAGCGGGCCACUUUACAGGCAA
.....(((...................((((.....))))...(((((((((((..((........))((((.........))))..........))))))))))).........))).. (-27.86 = -28.18 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:24 2006