Locus 7025

Sequence ID X_DroMel_CAF1
Location 17,589,803 – 17,589,918
Length 115
Max. P 0.940678
window11479

overview

Window 9

Location 17,589,803 – 17,589,918
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.56
Mean single sequence MFE -31.88
Consensus MFE -25.91
Energy contribution -26.72
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.81
SVM decision value 1.31
SVM RNA-class probability 0.940678
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17589803 115 + 22224390
-----CAGAUUGAGAUUUCUGAUUCCUGAUUCCUGUUCCAAUUGCAAUUCCAAUCUGUUGCGGAGGGUGUUAAGCGCUCGACGCAGCGCCCGGAAUUAUUAUCGAAAUACUUAUCAAACA
-----..(((.((((((((.(((...(((((((...(((....(((((........))))))))(((((((..(((.....)))))))))))))))))..)))))))).))))))..... ( -35.00)
>DroSec_CAF1 9119 108 + 1
-----UCGAUUCAGAUCUCUGA-------UUCCUGUUCCAAUUGCAAUUCCAAUCUGUUGCGGAGGGUGUUAAGCGCUCGUCGCAGCGCCCGGAAUUAUUAUCGAAAUACUUAUCAAACA
-----(((((((((....))))-------.....(((((..(((((((........))))))).(((((((..(((.....)))))))))))))))....)))))............... ( -30.80)
>DroEre_CAF1 9036 104 + 1
---------UUCAGAUUUCCGAUUC-------CUGUUCCAAUUGCAAUUCCAAUCUGUUGCGGAGGGUGUUAAGCGCCCGUCGCAGCGCCCGGAAUUAUUAUCGAAAUACUUAUCAAACA
---------.....(((((.(((..-------..(((((.((((......))))..((((((..(((((.....)))))..))))))....)))))....))))))))............ ( -31.50)
>DroYak_CAF1 19701 119 + 1
AGUUACCGAUUCAGAUCUCUGAUUCCUG-UUCCUGUUCCAAUUGCAAUUCCAAUCUGUUGCGGAGGGUGUUAAGCGCUCGUCGCAGCGCCCGGAAUUAUUAUCGAAAUACUUAUCAAACA
((..((.((.((((....)))).))..)-)..))(((((..(((((((........))))))).(((((((..(((.....)))))))))))))))........................ ( -30.20)
>consensus
_____CCGAUUCAGAUCUCUGAUUC____UUCCUGUUCCAAUUGCAAUUCCAAUCUGUUGCGGAGGGUGUUAAGCGCUCGUCGCAGCGCCCGGAAUUAUUAUCGAAAUACUUAUCAAACA
.......(((....(((((...............((.......))((((((....(((((((..(((((.....)))))..)))))))...))))))......)))))....)))..... (-25.91 = -26.72 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:23 2006