Locus 7023

Sequence ID X_DroMel_CAF1
Location 17,588,578 – 17,588,697
Length 119
Max. P 0.998650
window11474

overview

Window 4

Location 17,588,578 – 17,588,697
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.80
Mean single sequence MFE -29.20
Consensus MFE -25.68
Energy contribution -25.40
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -2.33
Structure conservation index 0.88
SVM decision value 3.17
SVM RNA-class probability 0.998650
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17588578 119 - 22224390
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGUGAAAAAAAGAGUCGACGGC-GAAGUUGAAGACUGUUCAACUGAAUCGAAAGAUUUGAGUUUAUGCGUUGGCGAAA
..(((..((((((((((........(((((((..(((......)))..........(((((...-...)))))...)))))))...(((((....)))))..)))))))).))..))).. ( -29.80)
>DroSec_CAF1 8004 119 - 1
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGUGAAAAAAAGAGUCGAUGGC-GAAGUUGAAGACUGUUCAACUGGAUCGAAAGAUUUGCGUUUAUGCGGUGGCGAAA
..(((....((((((........((....))..(((((((((..(((.........(((....)-))(((((((.....)))))))...)))...))))))))))))))).....))).. ( -28.60)
>DroSim_CAF1 26921 119 - 1
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGUGAAAAAAAGAGUCGAUGGC-GAAGUUGAAGACUGUUCAACUGGAGCGAGAGAUUUGCGUUUAUGCGNNNNNNNNN
.........((((((((......((....))..((((......))........(((((..(.((-..(((((((.....)))))))...)).)..))))))))))))))).......... ( -27.00)
>DroEre_CAF1 7922 119 - 1
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGCGAAAAAAAGAGUCGAUGGC-GAAGUUGAAGACUGUUCAACUGGAUCGAGAGAUUUGCGUUUAUGCGGUGCCGAAA
..(((.(..((((((........((....))..(((((((((..(((.........(((....)-))(((((((.....)))))))...)))...)))))))))))))))..)..))).. ( -29.80)
>DroYak_CAF1 18501 120 - 1
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGUGAAAAAAAGAGUCGAUGGCUGAAGUUGAAGACUGUUCAACUGGAUCGAGAGAUUUGCGUUUAUGCGGUGUCGAAA
..((((...((((((........((....))..(((((((((..(((.......(((.....)))..(((((((.....)))))))...)))...)))))))))))))))....)))).. ( -30.80)
>consensus
AAUUGAAAAGCGUGAAUAACAAACGUGAACGGGGCGCAAAUUGGUGAAAAAAAGAGUCGAUGGC_GAAGUUGAAGACUGUUCAACUGGAUCGAGAGAUUUGCGUUUAUGCGGUGGCGAAA
.........((((((((........(((((((..(((......)))..........(((((.......)))))...)))))))...(((((....)))))..)))))))).......... (-25.68 = -25.40 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:19 2006