Locus 7022

Sequence ID X_DroMel_CAF1
Location 17,587,967 – 17,588,087
Length 120
Max. P 0.738900
window11473

overview

Window 3

Location 17,587,967 – 17,588,087
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.64
Mean single sequence MFE -30.02
Consensus MFE -29.49
Energy contribution -29.30
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.98
SVM decision value 0.44
SVM RNA-class probability 0.738900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17587967 120 + 22224390
AGCCAGAGCGAAGGGCAAUGGAAUGGAGUCGAAUGGGAUGGGUUAUUAUCCCAGGCAUAAAUGGAUUGUAAACGUGAUUUUUAUAGUCAUUUAGCAUAAUAAUGCAUUUUAUGGUUUUGG
..(((((((((((.(((.((..(((.....(..((((((((....))))))))..).((((((.((((((((.......)))))))))))))).)))..)).))).))))...))))))) ( -30.80)
>DroSec_CAF1 7366 120 + 1
AGCCAGAGCGAAGGGCAAUGAAAUGGAGUCGAAUGGGAUGGGUUAUUAUCCCAGGCAUAAAUGGAUUGUAAACGUGAUUUUUAUAGUCAUUUAGCAUAAUAAUGCAUUUUAUGGUUUUGG
..((((((((.....).((((((((.(......((((((((....)))))))).((.((((((.((((((((.......)))))))))))))))).......).)))))))).))))))) ( -31.00)
>DroEre_CAF1 7281 120 + 1
UGCCGGAGCGAAGGGCAAUGGAAUGGAGUCGAAUGGGAUGGGUUAUUAUCCCAGGCAUAAAUGGAUUGUAAACGUGAUUUUUAUAGUCAUUUAGCAUAAUAAUGCAUUUUAUGGUUUUGG
..(((((((((((.(((.((..(((.....(..((((((((....))))))))..).((((((.((((((((.......)))))))))))))).)))..)).))).))))...))))))) ( -30.00)
>DroYak_CAF1 17912 120 + 1
UCACGGAGCGAAGGGCAAUGGAAUGGAGUCGAAUGGGAUGGGUUAUUAUCCCAGGCAUAAAUGGAUUGUAAACGUGAUUUUUAUAGUCAUUUAGCAUAAUAAUGCAUUUUAUGGUUUUGG
...((((((((((.(((.((..(((.....(..((((((((....))))))))..).((((((.((((((((.......)))))))))))))).)))..)).))).))))...)))))). ( -28.30)
>consensus
AGCCAGAGCGAAGGGCAAUGGAAUGGAGUCGAAUGGGAUGGGUUAUUAUCCCAGGCAUAAAUGGAUUGUAAACGUGAUUUUUAUAGUCAUUUAGCAUAAUAAUGCAUUUUAUGGUUUUGG
..((((((((.....).((((((((.(......((((((((....)))))))).((.((((((.((((((((.......)))))))))))))))).......).)))))))).))))))) (-29.49 = -29.30 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:17 2006