Locus 7021

Sequence ID X_DroMel_CAF1
Location 17,587,541 – 17,587,660
Length 119
Max. P 0.544610
window11472

overview

Window 2

Location 17,587,541 – 17,587,660
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.26
Mean single sequence MFE -37.68
Consensus MFE -34.35
Energy contribution -34.60
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.544610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17587541 119 - 22224390
GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCA-UUGCACUGAGAAUAAUAAUUAUUGCAGCCCAAUAUUA
((((((..((.....))....))))))(((.((((..(((....)))..)))).))).......((((((....((((((..-..))))))..((((.....))))))))))........ ( -41.10)
>DroSec_CAF1 6933 119 - 1
GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCU-UUGCACUGAGAACUAUAAUUACUGCAGCCCAAUAUAA
((((((..((.....))....))))))(((.((((..(((....)))..)))).))).......((((((....((((((..-..))))))((...........))))))))........ ( -39.70)
>DroEre_CAF1 6908 97 - 1
GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCGUUUGCACUGAGAGUC-----------------------
((((((((((.(((......))).)))(((.((((..(((....)))..)))).)))....)))))))((((..((((((.....)))))).)))).----------------------- ( -37.30)
>DroYak_CAF1 17448 101 - 1
GGCCAUUGGCAGCAGGUAGGUGUGGCAGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCC-AUGCACUGAGAAUAAUAAC------------------
(((((((.((.(((......))).)).(((.((((..(((....)))..)))).)))....)))))))......((((((..-..))))))...........------------------ ( -32.60)
>consensus
GGCCAUUGGCAGCAGGUAGGUGUGGCCGCGGCCUACGUAGCAAAUUGUUUGGGGCGCAUUAGAUGGCUGCUUACCAGUGCCA_UUGCACUGAGAAUAAUAAU__________________
((((((((((.(((......))).)))(((.((((..(((....)))..)))).)))....)))))))......((((((.....))))))............................. (-34.35 = -34.60 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:16 2006