Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,927,837 – 1,927,954 |
Length | 117 |
Max. P | 0.805754 |
Location | 1,927,837 – 1,927,954 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -29.08 |
Energy contribution | -29.44 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.50 |
Structure conservation index | 0.84 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1927837 117 - 22224390 ---AACGACGUGUGUUGUGUGUGCUGCAAAAAACAGCAUCUCGGACACGUUUGGGGGAGUUCAGCACAUCCAUCUGCGGCUGAUGACUCAGGCUGUGGAGGAAUAAUUAAAUAGAAAUGA ---.......(((((((...((((((.......))))))((((((....))))))......)))))))(((.((..(((((((....))).))))..))))).................. ( -34.00) >DroSec_CAF1 11801 114 - 1 ---AAUGACGUGUGUUGUGUGUGCAGCAA-AAACAGCAUCUCAGACACGUUUGC--GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA ---......(((((((((....)))))..-...((((.((.((((....)))).--))))).))))).(((.((..(((((((....)))))).)..))))).................. ( -33.50) >DroSim_CAF1 11416 114 - 1 ---AACGACGUGUGUUGUGUGUGCAGCAA-AAACAGCAUCUCAGACACGUUUGC--GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA ---......(((((((((....)))))..-...((((.((.((((....)))).--))))).))))).(((.((..(((((((....)))))).)..))))).................. ( -33.50) >DroEre_CAF1 12039 114 - 1 ---AACGAAGUGUGUUGUGUGUGCUGCAA-AAACAGCAUCUCGAGCACGUUUGG--GAGCUCGGAACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGACGAAUAAUUAAAUGGAAAUGA ---..((..(..((((.((.((((((...-...)))).(((((((....)))))--)))).)).))))..).((..(((((((....)))))).)..))))................... ( -33.60) >DroYak_CAF1 12040 117 - 1 AGCAACGACGUGUGUUGUGCGUGCUGCAA-AAACAGCAUCUCGAACACGUUUGG--CAGCUCGCAACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA .((...(((((((.(((.(.((((((...-...))))))).))))))))))..)--)...........(((.((..(((((((....)))))).)..))))).................. ( -38.40) >consensus ___AACGACGUGUGUUGUGUGUGCUGCAA_AAACAGCAUCUCGGACACGUUUGG__GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA ......(((((((.(((.(.((((((.......))))))).)))))))))).................(((.((..(((((((....)))))).)..))))).................. (-29.08 = -29.44 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:33 2006