| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,579,184 – 17,579,297 |
| Length | 113 |
| Max. P | 0.855243 |
| Location | 17,579,184 – 17,579,297 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -25.51 |
| Energy contribution | -25.63 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.855243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17579184 113 - 22224390 UCUGAUGGCAUGCAAAAGAGGCAUCGGAAG-----AAACGGGCAGGCCAUUCCAUAAUCCAUGUUUAAUGGGUUACU--CCGCCCAUCCGUUUCUUUUGCUGUCCAAAAGGGGAGCUGCC ......((((.(((((((((((.((....)-----)...((((.((.....)).((((((((.....))))))))..--..))))....)))))))))))..(((......)))..)))) ( -41.30) >DroSim_CAF1 19115 109 - 1 UCUGAUGGCAUGCAAAGGAGGCAUCGAAA------CAACGGACAGGCCAUCCCAUGUUCCAUGUUUAAUGGGUUACU--CCGCCCAUCAGUUUCUUUUGCUGUCCAAAAGG---GCUGCC ......((((.(((((((((((....(((------((..(((((((.....)).)))))..))))).((((((....--..))))))..))))))))))).((((....))---)))))) ( -37.90) >DroYak_CAF1 8923 106 - 1 UCUGAUGGCAUGCAAAAGAGGCAUCGGGAAAACAAAAACGGGCAG-----------UUCCAUGUUUUAUGGGCUACUCUCCGCCCAUCAGUUUCGUUUGGUGUCCAAAAGG---GCUGCC (((((((.(..........).)))))))............(((((-----------(((........((((((........))))))........(((((...))))).))---)))))) ( -30.60) >consensus UCUGAUGGCAUGCAAAAGAGGCAUCGGAA______AAACGGGCAGGCCAU_CCAU_UUCCAUGUUUAAUGGGUUACU__CCGCCCAUCAGUUUCUUUUGCUGUCCAAAAGG___GCUGCC .((..(((((.(((((((((((.................(((...............))).......((((((........))))))..))))))))))))).)))..)).......... (-25.51 = -25.63 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:14 2006