| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,578,847 – 17,578,966 |
| Length | 119 |
| Max. P | 0.847271 |
| Location | 17,578,847 – 17,578,966 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.52 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -18.52 |
| Energy contribution | -18.97 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17578847 119 - 22224390 -UCAUCGUCGUAAUCUUACCGCCUGGCGUGCAAAGCAAACAGCCAGCCUAAGCCAAAAAGCAUCAAAUUCAAAGCGAUAAAGCAUAAAUGAAUAUACAAAAAAAAAAGGUGAGUCCAAAA -.............(((((((.(((((.(((...)))....))))).)...((......)).....(((((..((......)).....)))))..............))))))....... ( -21.20) >DroSim_CAF1 18801 116 - 1 -UCAUCGUCGUAAUCUUACCGCCUGGCGUGCAAAGCAAACAGCCAGCUCAAGCCAAAAAGCAUCAAAUUCAAAGCGAUAAAGCAUAAAUGAAUA---AAAAAAAAAAGGUGAGUCGAAUA -......(((....((((((((.((((.(((...)))....))))))(((.((......))............((......)).....)))...---..........)))))).)))... ( -24.50) >DroYak_CAF1 8542 107 - 1 AUCAUCAUCUUAAUCUCACCGCCUGGCGUGCAAAGCAAACAGCCA----CAGCGAAGAAGCAUCAAAUUCAAAGCGAUAAACCAUAAAUGAAUA---------AAAAGGUGAGUCGAAAA ..............((((((...((((.(((...)))....))))----..((...(((........)))...))...................---------....))))))....... ( -20.20) >consensus _UCAUCGUCGUAAUCUUACCGCCUGGCGUGCAAAGCAAACAGCCAGC__AAGCCAAAAAGCAUCAAAUUCAAAGCGAUAAAGCAUAAAUGAAUA___AAAAAAAAAAGGUGAGUCGAAAA ..............((((((..(((((.(((...)))....))))).....((......)).....(((((..((......)).....)))))..............))))))....... (-18.52 = -18.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:13 2006