Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,577,466 – 17,577,578 |
Length | 112 |
Max. P | 0.666092 |
Location | 17,577,466 – 17,577,578 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -20.09 |
Energy contribution | -19.43 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.11 |
Mean z-score | -1.85 |
Structure conservation index | 0.84 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17577466 112 + 22224390 AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUUCGAAAGGAAU--------AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG .((((.((((....((....))..........((((..(((((....(((....)))..--------.)))))..))))....)))).))))...(((..((((((...))))))..))) ( -22.30) >DroSim_CAF1 17470 112 + 1 AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUCCGAAAGGAAU--------AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG .((((.((((....((....))..........((((..(((((....(((....)))..--------.)))))..))))....)))).))))...(((..((((((...))))))..))) ( -25.20) >DroYak_CAF1 7108 113 + 1 AAGCGGCAGCGACGAUGGAAAUGAAAUGAAAA-------UAGACAAGUCCAAAAGGAAUAUACAUAUAUUUAUGAUUUGAAGAGCGUGCGCUGCUCAAAUAUGAAGUUGCUUCAUUAUUG ....((((((((((.((((..((..((....)-------)...))..))))...........((((....))))..........))).)))))))(((..((((((...))))))..))) ( -24.40) >consensus AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUCCGAAAGGAAU________AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG ..((....)).........((((((.(((..................(((....)))...........((((((.(((((..(((....)))..))))))))))).))).)))))).... (-20.09 = -19.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:09 2006