| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,572,003 – 17,572,119 |
| Length | 116 |
| Max. P | 0.557117 |
| Location | 17,572,003 – 17,572,119 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -33.87 |
| Consensus MFE | -28.75 |
| Energy contribution | -28.97 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17572003 116 - 22224390 CAAAAAAAACAGCAGUCGACGAU--CGUCAGUGCUGCCCAUCGAGGGUGCUGCCCAUGCGCAGAGAGCACCAACGAGAGAGGGCUAC--AACAACGCCACAAUAGCGGUAAAAAUGAUAG ..........((((.(.(((...--.)))).))))((((.(((..((((((((......))....))))))..)))....))))...--.....(((.......)))............. ( -31.50) >DroSec_CAF1 4303 112 - 1 ACAAAAAAACAGCAGUCGACGAUCUCGUCAGUGCUGCCCAUCGAGGGUGCUG------CGCAGAGAGCGCCAGCGAGAGAGGGCUAC--AACAACGCCACAAUAGCGGUAAAAAUUAUAG ..........((((.(.((((....))))).))))((((.(((..((((((.------(.....)))))))..)))....))))...--.....(((.......)))............. ( -34.70) >DroEre_CAF1 3263 113 - 1 CAAAAAAAACAGCAGUCGACGAU--CGCCAGUGCUGCCCAUCGAGGGUGCUGCCCAUGCGCAGAGAGCGCCAGUG-----GGGCUAUCGAGAGAGGCCACAAUAGCGGUGAAAAUAAUAG ......................(--((((......((((.....))))((((.((((((((.....))))..)))-----)((((.((....))))))....)))))))))......... ( -35.40) >consensus CAAAAAAAACAGCAGUCGACGAU__CGUCAGUGCUGCCCAUCGAGGGUGCUGCCCAUGCGCAGAGAGCGCCAGCGAGAGAGGGCUAC__AACAACGCCACAAUAGCGGUAAAAAUAAUAG ..........((((.(.((((....))))).))))((((.(((..((((((..............))))))..)))....))))...........(((.(....).)))........... (-28.75 = -28.97 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:08 2006