Locus 7013

Sequence ID X_DroMel_CAF1
Location 17,568,736 – 17,568,855
Length 119
Max. P 0.853797
window11460

overview

Window 0

Location 17,568,736 – 17,568,855
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 98.88
Mean single sequence MFE -28.97
Consensus MFE -28.63
Energy contribution -28.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.99
SVM decision value 0.80
SVM RNA-class probability 0.853797
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17568736 119 + 22224390
CGGAAACCAAAAAUCUGCAAAGGCAACUUUAGCAAGGAUACCAAAUAGAAAAGCAGCUAACCAAAUCAGAAUGAAUUGCGGUGCUUUGCGGGCAAUUAGCGACGAGGUGCAAAUGCAGA
.(....)......((((((...(((.((((.((((((.((((...(((........)))..(((.((.....)).))).))))))))))..((.....))...)))))))...)))))) ( -29.90)
>DroSim_CAF1 3296 119 + 1
CGGAAACCAAAAAUCUGCAAAGGCAACUUUAGCCAGGAUACCAAAUAGAAAAGCAGCUAACCAAAUCAGAAUGAAUUGCGGUGCUUUGCGGGCAAUUAGCGACGAGGUGCAAAUGCAGA
.(....)......((((((..(((.......)))..(.((((.......((((((.(....(((.((.....)).))).).)))))).((.((.....))..)).)))))...)))))) ( -26.90)
>DroYak_CAF1 7693 119 + 1
CGGAAACCAAAAAUCUGCAAAGGCAACUUUAGCAAGGAUACCAAAUAGAAAAGCAGCUAACCAAAUCAGAAUGAAUUGCGGUGCUUUGCGAGCAAUUAGCGACGAGGUGCAAAUGCAGA
.(....)......((((((...(((.((((.((((((.((((...(((........)))..(((.((.....)).))).))))))))))..((.....))...)))))))...)))))) ( -30.10)
>consensus
CGGAAACCAAAAAUCUGCAAAGGCAACUUUAGCAAGGAUACCAAAUAGAAAAGCAGCUAACCAAAUCAGAAUGAAUUGCGGUGCUUUGCGGGCAAUUAGCGACGAGGUGCAAAUGCAGA
.(....)......((((((...(((.((((.((((((.((((...(((........)))..(((.((.....)).))).))))))))))..((.....))...)))))))...)))))) (-28.63 = -28.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:06 2006