Locus 7011

Sequence ID X_DroMel_CAF1
Location 17,555,570 – 17,555,725
Length 155
Max. P 0.965872
window11456 window11457

overview

Window 6

Location 17,555,570 – 17,555,686
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 79.39
Mean single sequence MFE -20.30
Consensus MFE -14.65
Energy contribution -14.77
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.51
SVM RNA-class probability 0.764312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17555570 116 + 22224390
AUUUCAAAAAAGAUGAAACUGUUGUGUUGUUUUGCAAAACUCUAUUAAAAUGUCACCCUACCUUUGUCUAUUUUUGGCUAAAGUAUUUUAAGGAAAAACAACCUUAGAGUUUAGAA
...((((((((((..((..((..(((.(((((((...........))))))).)))..))..))..))).)))))))((((...(((((((((........))))))))))))).. ( -19.30)
>DroSec_CAF1 7482 98 + 1
AUUAAAAAGAAGGUGAAGCUGUUGCGUUGUUUUGCAAAACUCAUUUAAAAUGGCU---UACUU---------------UAAAGUAUUUUAAGGAAAAACAACCUUAAAGUACAGAU
.........(((((((.((..(((((......)))))....(((.....))))))---)))))---------------)...(((((((((((........))))))))))).... ( -22.60)
>DroSim_CAF1 7305 98 + 1
AUUAAAAAGAAGGUGAAGCUGUUGUGUUGUUUUGCAAAACUCAUUUAAAAUGUCU---UACUU---------------UAAAGUAUUUUAAGGAAAAACAACCUUAGGGUACAGAA
.........(((((((..(....(((..((((....)))).))).......)..)---)))))---------------)...(((((((((((........))))))))))).... ( -19.00)
>consensus
AUUAAAAAGAAGGUGAAGCUGUUGUGUUGUUUUGCAAAACUCAUUUAAAAUGUCU___UACUU_______________UAAAGUAUUUUAAGGAAAAACAACCUUAGAGUACAGAA
..........((((((.....(((((......)))))...))))))....................................(((((((((((........))))))))))).... (-14.65 = -14.77 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 17,555,606 – 17,555,725
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.53
Mean single sequence MFE -21.60
Consensus MFE -13.83
Energy contribution -15.17
Covariance contribution 1.34
Combinations/Pair 1.12
Mean z-score -2.47
Structure conservation index 0.64
SVM decision value 1.59
SVM RNA-class probability 0.965872
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17555606 119 + 22224390
AAACUCUAUUAAAAUGUCACCCUACCUUUGUCUAUUUUUGGCUAAAGUAUUUUAAGGAAAAACAACCUUAGAGUUUAGAACAUAAAGAGUUAU-UUAAGUGUGACCAAGUUAAAUUAAAA
.((((((..................(((((.(((....))).))))).(((((((((........)))))))))...........)))))).(-((((...((((...))))..))))). ( -18.10)
>DroSec_CAF1 7518 102 + 1
AAACUCAUUUAAAAUGGCU---UACUU---------------UAAAGUAUUUUAAGGAAAAACAACCUUAAAGUACAGAUCAUGAAGAGUUCUUUUAAGUGUGACCAUGUUAAAUUUAAA
......((((((.((((.(---(((((---------------(((((((((((((((........)))))))))))(((.(.......).))))))))).)))))))).))))))..... ( -22.80)
>DroSim_CAF1 7341 102 + 1
AAACUCAUUUAAAAUGUCU---UACUU---------------UAAAGUAUUUUAAGGAAAAACAACCUUAGGGUACAGAACAUGAAGUGUUCUUUUAAGUGUGACCAUAUUAAAUUUAAA
......((((((.(((((.---(((((---------------.((((((((((((((........)))))))))))(((((((...))))))))))))))).)).))).))))))..... ( -23.90)
>consensus
AAACUCAUUUAAAAUGUCU___UACUU_______________UAAAGUAUUUUAAGGAAAAACAACCUUAGAGUACAGAACAUGAAGAGUUCUUUUAAGUGUGACCAUGUUAAAUUUAAA
...(.(((((((((................................(((((((((((........))))))))))).((((.......))))))))))))).)................. (-13.83 = -15.17 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:03 2006