| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,554,566 – 17,554,672 |
| Length | 106 |
| Max. P | 0.971449 |
| Location | 17,554,566 – 17,554,672 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -30.57 |
| Consensus MFE | -23.06 |
| Energy contribution | -23.42 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17554566 106 - 22224390 ---UUAGAAUAU-CUAUCAAUACAAUCUGGGAGUGCUCACCGAAAUCUCCUCGCUGCAGUAGGCGGUGAAUGUCUGAUCGUCCUGUUGCAGCACGCAGUAUAAAGGACCC ---.(((.....-)))...((((.....(((((.............))))).(((((((((((((((.(.....).)))).))))))))))).....))))......... ( -28.02) >DroVir_CAF1 22323 98 - 1 -AUUUUGUUACU-CGCU------A--CU--CGUUACUUACCGAAAUCUCUUCGCUGCAGUAGGCAGUAAAUGUUUGAUCAUCCUGCUGCAGCACACAAUACAGCGGACCC -..........(-((((------.--.(--((........))).........(((((((((((......(((......)))))))))))))).........))))).... ( -26.80) >DroGri_CAF1 13655 98 - 1 -UGUGUGUGACU-UGCC------A--CU--CGCUACUCACCGAAAUCUCCUCGCUGCAGUAGGCGGUAAAUGUUUGAUCGUCCUGCUGCAGCACACAGUACAGCGGUCCC -.(((.(((...-...)------)--).--))).....((((....((....(((((((((((((((.........)))).)))))))))))....)).....))))... ( -34.80) >DroSec_CAF1 6470 106 - 1 ---UUAGUAUAU-CUAUCAAUACAAUCUGGGAGUGCUCACCGAUAUCUCCUCGCUGCAGUAGGCGGUGAAUGUCUGAUCGUCCUGCUGCAGCACGCAGUAUAAAGGACCC ---........(-((....((((.....(((((.............))))).(((((((((((((((.(.....).)))).))))))))))).....))))...)))... ( -33.32) >DroYak_CAF1 42 106 - 1 ---UUGGGGUAUACUAUCAAUAU-AUCUGGGAUUGCUCACCGAUAUCUCCUCGCUGCAGUAGGCGGUAAAUGUCUGAUCGUCCUGCUGCAGCACGCAGUACAAAGGACCC ---...((((...((......((-(((.((((....)).)))))))......(((((((((((((((.........)))).)))))))))))...........)).)))) ( -35.00) >DroMoj_CAF1 42 92 - 1 AAAUUUGU--------U------A--CU--CCUUACUUACCGAAAUCUCCUCGCUGCAGUAGGCAGUAAAUGUUUGAUCGUCCUGCUGCAGCACACAGUAGAGUGGUCCC .......(--------(------(--((--(..((((....((.......))((((((((((((..(((....)))...).)))))))))))....)))))))))).... ( -25.50) >consensus ___UUUGUAUAU_CUAU______A__CU__CAUUACUCACCGAAAUCUCCUCGCUGCAGUAGGCGGUAAAUGUCUGAUCGUCCUGCUGCAGCACACAGUACAAAGGACCC .......................................((((.......))(((((((((((((((.........)))).)))))))))))............)).... (-23.06 = -23.42 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:02 2006